View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_high_14 (Length: 442)

Name: NF11959_high_14
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_high_14
NF11959_high_14
[»] chr7 (2 HSPs)
chr7 (28-427)||(40242873-40243289)
chr7 (1-32)||(40242781-40242812)
[»] chr3 (4 HSPs)
chr3 (32-92)||(25651296-25651356)
chr3 (46-99)||(11667801-11667854)
chr3 (46-88)||(10515513-10515555)
chr3 (46-86)||(46246933-46246973)
[»] chr4 (1 HSPs)
chr4 (28-95)||(19297011-19297078)
[»] chr8 (2 HSPs)
chr8 (41-87)||(31897065-31897111)
chr8 (51-95)||(16530221-16530265)
[»] chr5 (3 HSPs)
chr5 (45-95)||(27388854-27388904)
chr5 (46-89)||(8883572-8883615)
chr5 (44-92)||(16234689-16234737)
[»] chr2 (2 HSPs)
chr2 (42-88)||(2341711-2341757)
chr2 (37-88)||(29504763-29504814)
[»] chr1 (2 HSPs)
chr1 (32-88)||(40894764-40894819)
chr1 (32-88)||(31285330-31285386)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 28 - 427
Target Start/End: Original strand, 40242873 - 40243289
Alignment:
Q  28 atttagtttagtagatggttaattcaattcacaatcaaaattgtggttaattcaactacatgaataactatatgatttaagcatagttttgaatgtgatt 127  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  40242873 atttagtttagtaaatggttaattcaattcacaatcaaaattgtggttaattcaactacatgaataactacatgatctaagcatagttttgaatatgatt 40242972  T
Q  128 aatcatatgtcacgtgtatatggacattagatatccatagaactttttgtagatgttctcttaagagaaaatccaactttagtttaaatctcttggaaga 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40242973 aatcatatgtcacgtgtatatggaaattagatatccatagaactttttgtagatgttctcttaagagaaattccaactttagtttaaatctcttggaaga 40243072  T
Q  228 ataaggaaaaagattaagaaaa-----aggttaatgtggcattattacgaggatatattcttgagaaattccaactttt-gtagttgttgcaattaaata 321  Q
    ||||||||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  40243073 ataaggaaaaagattaagaaaagaaaaagggtaatgtggcattattacgaggatatattcttgagaaattccaactttttgtagttgttgaaattaaata 40243172  T
Q  322 accagttggaagagcactagacttattaaaaagaatgaaatttacagatacacgaaacaaataattattgagataatta-----------atggtgttga 410  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||           ||||||||||    
T  40243173 accagttggacgagcactagacttattaaaaagaatgaaatttacaggtacacgaaacaaataattatagagataattagtcaataaataatggtgttga 40243272  T
Q  411 aatatcaattttggatt 427  Q
    |||||||||||||||||    
T  40243273 aatatcaattttggatt 40243289  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40242781 - 40242812
Alignment:
Q  1 taacgattaaaatattcaaacaatgatattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  40242781 taacgattaaaatattcaaacaatgatattta 40242812  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 25651296 - 25651356
Alignment:
Q  32 agtttagtagatggttaattcaattcacaatcaaaattgtggttaattcaactacatgaat 92  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||    
T  25651296 agtttagtagatggttaattcaattcacagtcaaaattctggttaatttaactgcatgaat 25651356  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 11667801 - 11667854
Alignment:
Q  46 ttaattcaattcacaatcaaaattgtggttaattcaactacatgaataactata 99  Q
    |||||||||||||  |||| |||||||||||||||||||||| || ||||||||    
T  11667801 ttaattcaattcatgatcagaattgtggttaattcaactacacgattaactata 11667854  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 10515513 - 10515555
Alignment:
Q  46 ttaattcaattcacaatcaaaattgtggttaattcaactacat 88  Q
    |||||||||||||| ||||||||| | ||||||||||||||||    
T  10515513 ttaattcaattcacgatcaaaattatcgttaattcaactacat 10515555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 46246933 - 46246973
Alignment:
Q  46 ttaattcaattcacaatcaaaattgtggttaattcaactac 86  Q
    |||||| |||||||| | |||||||||||||||||||||||    
T  46246933 ttaatttaattcacagttaaaattgtggttaattcaactac 46246973  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 19297078 - 19297011
Alignment:
Q  28 atttagtttagtagatggttaattcaattcacaatcaaaattgtggttaattcaactacatgaataac 95  Q
    |||||||| | |||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||    
T  19297078 atttagttgaatagatggttaattcaattcacggtcaaaattctggttaattcaactacatgattaac 19297011  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 31897111 - 31897065
Alignment:
Q  41 gatggttaattcaattcacaatcaaaattgtggttaattcaactaca 87  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  31897111 gatggttgatttaattcacaatcaaaattatggttaattcaactaca 31897065  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 16530265 - 16530221
Alignment:
Q  51 tcaattcacaatcaaaattgtggttaattcaactacatgaataac 95  Q
    |||||||||| |||||||||||||| |||||| ||||||| ||||    
T  16530265 tcaattcacagtcaaaattgtggttgattcaagtacatgattaac 16530221  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 27388854 - 27388904
Alignment:
Q  45 gttaattcaattcacaatcaaaattgtggttaattcaactacatgaataac 95  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||| ||||    
T  27388854 gttaattcagttcacgatcaaaattgtggttaatccaactacatgattaac 27388904  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 8883572 - 8883615
Alignment:
Q  46 ttaattcaattcacaatcaaaattgtggttaattcaactacatg 89  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||    
T  8883572 ttaattcaattcataatcaaatttgtggttaatttaactacatg 8883615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 16234689 - 16234737
Alignment:
Q  44 ggttaattcaattcacaatcaaaattgtggttaattcaactacatgaat 92  Q
    |||||||||| ||  ||| |||||||||| |||||||||||||||||||    
T  16234689 ggttaattcagtttgcaaccaaaattgtgattaattcaactacatgaat 16234737  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 2341757 - 2341711
Alignment:
Q  42 atggttaattcaattcacaatcaaaattgtggttaattcaactacat 88  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  2341757 atggttaattcagttcacaatcaaaattatggttaattcaagtacat 2341711  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 29504814 - 29504763
Alignment:
Q  37 agtagatggttaattcaattcacaatcaaaattgtggttaattcaactacat 88  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||||    
T  29504814 agtagatggttagttaaattcacaatgaatattgtggttaactcaactacat 29504763  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 40894819 - 40894764
Alignment:
Q  32 agtttagtagatggttaattcaattcacaatcaaaattgtggttaattcaactacat 88  Q
    |||| ||||||||||||||| |||||||| || ||||| ||||||||||||||||||    
T  40894819 agttgagtagatggttaatttaattcacagtc-aaattatggttaattcaactacat 40894764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 31285386 - 31285330
Alignment:
Q  32 agtttagtagatggttaattcaattcacaatcaaaattgtggttaattcaactacat 88  Q
    |||| |||||||| || | |||||||||| ||| |||| ||||||||||||||||||    
T  31285386 agttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacat 31285330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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