View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_16 (Length: 423)
Name: NF11959_high_16
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 33274452 - 33274038
Alignment:
| Q |
1 |
caacaaaggaggaaaattcaaaggaagaaacagaaacagcaacaacacaaacaggtttgttggtgttagacaaaggccatcagggagatgggtagctgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33274452 |
caacaaaggaggaaaattcaaaggaagaaacagaaacagcaataacacaaacaagtttgttggtgttaggcaaaggccatcagggagatgggtagctgag |
33274353 |
T |
|
| Q |
101 |
atcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33274352 |
atcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgag |
33274253 |
T |
|
| Q |
201 |
gttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgcttccaggataagaaatcttcttaacaacagaaaaggcgacaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33274252 |
gttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgcttccaggataagaaatcttcttaacaacagaaaaggcgacaaaaa |
33274153 |
T |
|
| Q |
301 |
acaggaagatggcgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaagcaatgatgataacaaggagagcact |
400 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33274152 |
acaggaagatggtgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaagcaatgatgataacaaggagagcact |
33274053 |
T |
|
| Q |
401 |
ctttcgacctatgct |
415 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
33274052 |
ctttcgacctgtgct |
33274038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 3160216 - 3160376
Alignment:
| Q |
56 |
tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||| | ||| | ||||| ||||| ||||||| |
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|
| T |
3160216 |
tttgttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctg |
3160315 |
T |
|
| Q |
156 |
aggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaac |
216 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||||| | ||||| ||||| |||||| |||| |
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|
| T |
3160316 |
aagaagctgcaagagcctatgatgaagctgcatgtatacttcgcggttccaacactagaac |
3160376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 289
Target Start/End: Original strand, 10029922 - 10030156
Alignment:
| Q |
55 |
gtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagct |
154 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||| || |||||||| || |||||||| || || |||||||||||||||||||||||||| |||||| |
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|
| T |
10029922 |
gtttgttggggtgagacaaagaccatcaggtagatatgttgctgagataaaggacacaacacaaaacataagaatgtggcttggaacatttgaaacagct |
10030021 |
T |
|
| Q |
155 |
gaggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttg |
254 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||| ||||| || ||||| ||||||||| |||| ||||| || | ||||| ||||| | |
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|
| T |
10030022 |
gaggaagcagcaagagcttatgatgaagccgcgacacttcttcgcggttccaaaactcgtaccaacttcgtcacacatgtttcttatgattcccctctcg |
10030121 |
T |
|
| Q |
255 |
cttccaggataagaaatcttcttaacaacagaaaa |
289 |
Q |
| |
|
|||| |||| || ||||||| |||||| ||||| |
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|
| T |
10030122 |
cttctcggattcgacatcttctcaacaaccgaaaa |
10030156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 4038684 - 4038814
Alignment:
| Q |
56 |
tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg |
155 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||| |||||||| ||||| || | ||| ||||||||| | ||| | ||||| ||||| ||||||| |
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|
| T |
4038684 |
tttgttggcgttcgacaaaggccatcgggtagatgggttgctgagattaaagataccattcaaaagataagagtttggttaggaacttttgatacagctg |
4038783 |
T |
|
| Q |
156 |
aggaagcagctagagcttatgatgaagctgc |
186 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| |
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|
| T |
4038784 |
aagaagctgctagagcttatgatgaggctgc |
4038814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 10554660 - 10554724
Alignment:
| Q |
124 |
aagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcat |
188 |
Q |
| |
|
|||| |||||||||| || ||||| |||||||| | ||||||| ||||||||||||||||||| |
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|
| T |
10554660 |
aagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgcat |
10554724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 12508734 - 12508608
Alignment:
| Q |
60 |
ttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga |
159 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||| | ||||| | ||||||||||| | ||| ||| | || || |
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|
| T |
12508734 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga |
12508635 |
T |
|
| Q |
160 |
agcagctagagcttatgatgaagctgc |
186 |
Q |
| |
|
||| ||| ||||||| || |||||||| |
|
|
| T |
12508634 |
agctgctcgagcttacgacgaagctgc |
12508608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 35665874 - 35666005
Alignment:
| Q |
55 |
gtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagct |
154 |
Q |
| |
|
||||||||| || |||||||| | ||||| | ||||| ||| ||||| ||||||||| | |||| || || ||||||||||| || | | | || ||| |
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|
| T |
35665874 |
gtttgttggagtgagacaaagagcttcaggaaaatgggcagcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgct |
35665973 |
T |
|
| Q |
155 |
gaggaagcagctagagcttatgatgaagctgc |
186 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |
|
|
| T |
35665974 |
gaggaagctgctcgagcttacgatgaagctgc |
35666005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 2428725 - 2428679
Alignment:
| Q |
137 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc |
183 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2428725 |
ggaacatttgagacagctgaagaagcagctagagcatatgatgaagc |
2428679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 32072592 - 32072708
Alignment:
| Q |
71 |
caaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagag |
170 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||| | ||||| |||||| ||||| | || || | ||| || | ||| || || ||||||| |
|
|
| T |
32072592 |
caaagaccttcagggagatgggtggctgagatcaaagacaccatacagaacataagattgtggttggggacctatgacactggtgaagaggctgctagag |
32072691 |
T |
|
| Q |
171 |
cttatgatgaagctgca |
187 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
32072692 |
cttatgatgaggctgca |
32072708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 46024060 - 46024098
Alignment:
| Q |
71 |
caaaggccatcagggagatgggtagctgagatcaaagac |
109 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46024060 |
caaaggccatcaggaagatggatagctgagatcaaagac |
46024098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 46265307 - 46265269
Alignment:
| Q |
71 |
caaaggccatcagggagatgggtagctgagatcaaagac |
109 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46265307 |
caaaggccatcaggaagatggatagctgagatcaaagac |
46265269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 47101407 - 47101350
Alignment:
| Q |
129 |
tgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc |
186 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||||||| ||||| |||||| ||||||| |
|
|
| T |
47101407 |
tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc |
47101350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 15403650 - 15403688
Alignment:
| Q |
140 |
acatttgagacagctgaggaagcagctagagcttatgat |
178 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15403650 |
acatttgacacagctgaagaagcagctagagcttatgat |
15403688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 44648732 - 44648686
Alignment:
| Q |
137 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc |
183 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
44648732 |
ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
44648686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 43490124 - 43490075
Alignment:
| Q |
137 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc |
186 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||||| |||||||||||||| |
|
|
| T |
43490124 |
ggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgc |
43490075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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