View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_17 (Length: 416)
Name: NF11959_high_17
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 7597531 - 7597915
Alignment:
| Q |
18 |
gaatccactgcatagggtgatataaaccaagggcttctcctattgccacgggacataccggtgtgaaagtcatagtagttaaagnnnnnnnntcgtaaca |
117 |
Q |
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| T |
7597531 |
gaatccactgcatagggtgatataaaccaagggcttctcctattgccacggcacataccggtgtgaaagtcatagtagttaaagaaaaaaaatcgtaaca |
7597630 |
T |
|
| Q |
118 |
gggaatatatcacgtgcaatctacagtgcacgtgctttagatgcaacctcgtacggccatacaaagttatttttgtctagcacggctatataaattcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7597631 |
gggaatatatcacgtgcaatctacagtgcacgtgctttagatgcaacctcgtacggccatacaaagttatttttgtctagcacggctatataaattcaca |
7597730 |
T |
|
| Q |
218 |
ctctttaataaaaatattcttctaaatatgaatatggagatggtaaaggtgaacatagtgtaaatgtttttaagtaaagactttaccatctcag-aaaaa |
316 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7597731 |
ctctttaataaaaatattctcctaaatatggatatggagatggtaaaggtgaacatagtgtaaatgtttttaagtaaagactttaccatctcagaaaaaa |
7597830 |
T |
|
| Q |
317 |
attcacacttttgtcaattaacaaaactcgcatctattcacctaaaggatatgaacccaatcattttgaaggcctttccattcat |
401 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7597831 |
attcacacctttgtcaattaacaaaactcacatctattcacctaaaggatatgaacccaatcattttgaaggcctttccgttcat |
7597915 |
T |
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