View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_high_18 (Length: 414)

Name: NF11959_high_18
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_high_18
NF11959_high_18
[»] chr5 (6 HSPs)
chr5 (18-412)||(8726407-8726790)
chr5 (20-127)||(8707267-8707374)
chr5 (24-127)||(8695564-8695667)
chr5 (372-414)||(36786279-36786321)
chr5 (365-412)||(2050928-2050975)
chr5 (365-414)||(22920513-22920562)
[»] chr1 (12 HSPs)
chr1 (372-414)||(43056724-43056766)
chr1 (365-414)||(39128411-39128460)
chr1 (367-414)||(47113277-47113324)
chr1 (365-414)||(1156480-1156529)
chr1 (365-414)||(3919301-3919350)
chr1 (365-414)||(11038263-11038312)
chr1 (365-414)||(26501296-26501345)
chr1 (365-414)||(39815347-39815396)
chr1 (365-414)||(43457840-43457889)
chr1 (365-414)||(49621364-49621413)
chr1 (365-414)||(7203865-7203914)
chr1 (365-414)||(27352631-27352680)
[»] chr4 (8 HSPs)
chr4 (371-414)||(6239387-6239430)
chr4 (372-414)||(33484129-33484171)
chr4 (365-414)||(40721985-40722034)
chr4 (365-414)||(44170640-44170689)
chr4 (365-414)||(45779312-45779361)
chr4 (365-414)||(49768890-49768939)
chr4 (365-414)||(53763832-53763881)
chr4 (386-414)||(5466516-5466544)
[»] chr3 (9 HSPs)
chr3 (365-412)||(27646499-27646546)
chr3 (365-414)||(47056547-47056596)
chr3 (365-414)||(49886695-49886744)
chr3 (365-414)||(1834507-1834556)
chr3 (365-414)||(39604267-39604316)
chr3 (365-414)||(47141621-47141670)
chr3 (365-414)||(47849673-47849722)
chr3 (365-414)||(52100262-52100311)
chr3 (365-413)||(53932413-53932461)
[»] scaffold0291 (1 HSPs)
scaffold0291 (365-410)||(20070-20115)
[»] chr8 (6 HSPs)
chr8 (367-414)||(42130999-42131046)
chr8 (365-414)||(11114690-11114739)
chr8 (365-414)||(14548844-14548893)
chr8 (365-414)||(24116041-24116090)
chr8 (365-414)||(35937533-35937582)
chr8 (365-414)||(38504171-38504220)
[»] chr6 (2 HSPs)
chr6 (367-410)||(21911174-21911217)
chr6 (365-414)||(16743287-16743336)
[»] chr2 (6 HSPs)
chr2 (364-414)||(34373005-34373055)
chr2 (365-414)||(6328668-6328717)
chr2 (365-414)||(9695082-9695131)
chr2 (365-414)||(13850205-13850254)
chr2 (365-414)||(33559640-33559689)
chr2 (365-414)||(44484677-44484726)
[»] chr7 (4 HSPs)
chr7 (365-414)||(28081803-28081852)
chr7 (365-414)||(40077255-40077304)
chr7 (365-414)||(42060657-42060706)
chr7 (365-414)||(43079653-43079702)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 8726790 - 8726407
Alignment:
Q  18 attattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8726790 attattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagaga 8726691  T
Q  118 gcatgtttgtttgtttcgttatgcgatgaaaaagtcgttgtaagaagttactatgattttggaatgagaatgctcatcattttatatgaagaaggtggag 217  Q
    |||||||||||||||||||||||           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8726690 gcatgtttgtttgtttcgttatg-----------tcgttgtaagaagttactatgattttggaattagaatgctcatcattttatatgaagaaggtggag 8726602  T
Q  218 tttgtgggttccactatagaaaaaagccgtggttgtaattgtgtttgttgatttgcaaagcacggaaatacttatctaatgggcgattcaatagatacgt 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  8726601 tttgtgggtcccactatagaaaaaagccgtggttgtaattgtgtttgttgatttgcagagcacggaaatacttatctaatgggcgattctatagatacgt 8726502  T
Q  318 gctgactcagaatctccttgcctttagcttatcctattttccccactagaaattatatttatacaaccattttgcaataatttttggacaacttt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8726501 gctgactcagaatctccttgcctttagcttatcctattttccccacgagaaattatatttatataaccattttgcaataatttttgtacaacttt 8726407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 8707374 - 8707267
Alignment:
Q  20 tattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagagagc 119  Q
    ||||||||| |||||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || || |||    
T  8707374 tattggcttcgatctgacgcggcacggtggtggtgttacggtggcgccggagaagttaccggcggcgtagagagaagaaggaagagatatggaggaaagc 8707275  T
Q  120 atgtttgt 127  Q
    ||||||||    
T  8707274 atgtttgt 8707267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 8695667 - 8695564
Alignment:
Q  24 ggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagagagcatgt 123  Q
    ||||||||| | || || |||| |||||| || ||||  ||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||    
T  8695667 ggctttgatttaacgcggcacgacggtggagtgacggacgtgccggagaagttaccggcggcgtagagagaagaaggaagagatatggaggaaagcatgt 8695568  T
Q  124 ttgt 127  Q
    ||||    
T  8695567 ttgt 8695564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 36786321 - 36786279
Alignment:
Q  372 atatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  36786321 atatttgtccaaccattttgcaataatttttggacaactttct 36786279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 2050928 - 2050975
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaacttt 412  Q
    |||||| |||||| ||||||||||||| || |||||||||||||||||    
T  2050928 agaaatgatatttgtacaaccattttgtaacaatttttggacaacttt 2050975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 22920562 - 22920513
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| || || ||||||||||||||||    
T  22920562 agaaataatatttgtacaaccattttgtaacaaattttggacaactttct 22920513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 43056724 - 43056766
Alignment:
Q  372 atatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  43056724 atatttgtacaaccattttgcaataatttttggacaactttct 43056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 39128411 - 39128460
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  39128411 agaaattatatttgtacaattattttgcaataatttttggacaactttct 39128460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 47113277 - 47113324
Alignment:
Q  367 aaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  47113277 aaatgatatttgtacaatcattttgcaataatttttggacaactttct 47113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 1156480 - 1156529
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||||||||    
T  1156480 agaaattatatttgtacattcattttgcaataattttttgacaactttct 1156529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 3919301 - 3919350
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  |||||||||||||||||||||    
T  3919301 agaaatgatatttgtacaaccattttgttataatttttggacaactttct 3919350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 11038263 - 11038312
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| ||||||||||||||||||||  |||||||||| ||||||||||    
T  11038263 agaaatgatatttatacaaccattttggtataatttttgtacaactttct 11038312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 26501296 - 26501345
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||||||||||    
T  26501296 agaaatgatatttgtacaaccattttgtaataacttttggacaactttct 26501345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 39815347 - 39815396
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| |||||||||||||| | || ||||||||||||||||    
T  39815347 agaaattatatttgtacaaccattttgctacaacttttggacaactttct 39815396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 43457889 - 43457840
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||| |||| ||||||||||||||||    
T  43457889 agaaatgatatttgtacaaccattttgcgataacttttggacaactttct 43457840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 49621364 - 49621413
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| |||||||||| |||||||||||    
T  49621364 agaaatgatatttgtacaaccattttgtaataatttttagacaactttct 49621413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 7203914 - 7203865
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| || ||||||||||||| ||||||| |||||||||||    
T  7203914 agaaatgatatttgtataaccattttgcaacaatttttagacaactttct 7203865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 27352631 - 27352680
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  |||| ||||||||||||||||    
T  27352631 agaaatgatatttgtacaaccattttgtgataacttttggacaactttct 27352680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 6239387 - 6239430
Alignment:
Q  371 tatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  6239387 tatatttgtacaaccattttgcaataattttttgacaactttct 6239430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 33484171 - 33484129
Alignment:
Q  372 atatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||||||||||  |||||||||||||||||||||    
T  33484171 atatttgtacaaccattttgtgataatttttggacaactttct 33484129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 40722034 - 40721985
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||| |||||||  ||||||||||||||||||||||    
T  40722034 agaaatgatatttgtacatccattttataataatttttggacaactttct 40721985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 44170689 - 44170640
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  ||||||||| |||||||||||    
T  44170689 agaaatgatatttgtacaaccattttgttataattttttgacaactttct 44170640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 45779361 - 45779312
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| ||||||||||||| ||||||  ||||||||| |||||||||||    
T  45779361 agaaatgatatttatacaactattttgttataattttttgacaactttct 45779312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 49768939 - 49768890
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||| ||||||||||| ||||||| |||||||||||    
T  49768939 agaaatgatatttgtacatccattttgcaacaattttttgacaactttct 49768890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 53763881 - 53763832
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| ||||| |||||||| | || ||||||||||||||||    
T  53763881 agaaattatatttgtacaatcattttgctacaacttttggacaactttct 53763832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 5466544 - 5466516
Alignment:
Q  386 attttgcaataatttttggacaactttct 414  Q
    |||||||||||||||||||||||||||||    
T  5466544 attttgcaataatttttggacaactttct 5466516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 27646499 - 27646546
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaacttt 412  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  27646499 agaaatgatatttgtacaatcattttgcaataatttttggacaacttt 27646546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 47056596 - 47056547
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| | |||||||||||||| |||||||||||||||||||    
T  47056596 agaaatgatatttgtgcaaccattttgcaacaatttttggacaactttct 47056547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 49886695 - 49886744
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||| ||||||||| |||||||||||    
T  49886695 agaaatgatatttgtacaaccattttgctataatttttagacaactttct 49886744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 1834507 - 1834556
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||| | |||||||| ||||||||||    
T  1834507 agaaataatatttgtacaaccattttgctacaatttttgaacaactttct 1834556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 39604316 - 39604267
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||| ||| ||||||| |||||||||||    
T  39604316 agaaatgatatttgtacaaccatttttcaacaattttttgacaactttct 39604267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 47141670 - 47141621
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  |||||||||| ||||||||||    
T  47141670 agaaatgatatttgtacaaccattttggtataatttttgtacaactttct 47141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 47849673 - 47849722
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  ||||||||| |||||||||||    
T  47849673 agaaatgatatttgtacaaccattttgtgataattttttgacaactttct 47849722  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 52100262 - 52100311
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||  ||||||||||| ||||||||||    
T  52100262 agaaatgatatttgtacaaccattttttaataatttttgtacaactttct 52100311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 53932461 - 53932413
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttc 413  Q
    |||||| |||||| |||||||||||||  | ||||||||||||||||||    
T  53932461 agaaatgatatttgtacaaccattttgtgacaatttttggacaactttc 53932413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 20070 - 20115
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaact 410  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||||    
T  20070 agaaattatatttttacaaccattttgtaataattttttgacaact 20115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 42130999 - 42131046
Alignment:
Q  367 aaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  42130999 aaatgatatttatacaaccattctgcaacaacttttggacaactttct 42131046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 11114739 - 11114690
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||| |||||||||||||| |||| |||||||||||    
T  11114739 agaaatgatatttgtacatccattttgcaataactttttgacaactttct 11114690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 14548893 - 14548844
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||  |||||||||| |||||||||||    
T  14548893 agaaatgatatttgtacaaccattttttaataatttttagacaactttct 14548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 24116041 - 24116090
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| ||||  |||||||||| ||||||| |||||||||||    
T  24116041 agaaattatatttgtacattcattttgcaacaattttttgacaactttct 24116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 35937582 - 35937533
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| || || ||||||||||||||||    
T  35937582 agaaatgatatttgtacaaccattttgtaacaacttttggacaactttct 35937533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 38504171 - 38504220
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||| | ||||||| |||||||||||    
T  38504171 agaaatgatatttgtacaaccattttgctacaattttttgacaactttct 38504220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 21911217 - 21911174
Alignment:
Q  367 aaattatatttatacaaccattttgcaataatttttggacaact 410  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  21911217 aaataatatttatacaaccattttagaataatttttggacaact 21911174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 16743336 - 16743287
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||  |||||||||| |||||||||||    
T  16743336 agaaatgatatttgtacaaccattttttaataatttttagacaactttct 16743287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 34373005 - 34373055
Alignment:
Q  364 tagaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||| |||||| |||||||||||||  |||||||||| ||||||||||    
T  34373005 tagaaatgatatttgtacaaccattttggtataatttttgtacaactttct 34373055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 6328668 - 6328717
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||  |||||||||| ||||||||||    
T  6328668 agaaatgatatttgtacaaccattttggtataatttttgtacaactttct 6328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 9695131 - 9695082
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||| ||  |||||||||||||||||||||    
T  9695131 agaaatgatatttgtacaaccattatgagataatttttggacaactttct 9695082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 13850254 - 13850205
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||||||||| |||||||  |||||||||| ||||||||||    
T  13850254 agaaatgatatttatacaatcattttgatataatttttgtacaactttct 13850205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 33559640 - 33559689
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||   |||||||||||||||||||||    
T  33559640 agaaatgatatttgtacaaccattttagtataatttttggacaactttct 33559689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 44484726 - 44484677
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| || |||||||| ||||||||||    
T  44484726 agaaatgatatttgtacaaccattttgtaacaatttttgtacaactttct 44484677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 28081852 - 28081803
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| ||||||||||||| ||||||||||  ||||||||||    
T  28081852 agaaatgatatttgtacaaccattttgtaataatttttttacaactttct 28081803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 40077255 - 40077304
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    ||||||||||||| |||||| |||||| || ||||||| |||||||||||    
T  40077255 agaaattatatttgtacaactattttgtaacaatttttagacaactttct 40077304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 42060657 - 42060706
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||||||||| |||| |||| |||||||||||    
T  42060657 agaaatgatatttgtacaaccattttgctataactttttgacaactttct 42060706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 43079702 - 43079653
Alignment:
Q  365 agaaattatatttatacaaccattttgcaataatttttggacaactttct 414  Q
    |||||| |||||| |||||||| ||||  |||||||||||||||||||||    
T  43079702 agaaatgatatttgtacaaccactttgtgataatttttggacaactttct 43079653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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