View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_2 (Length: 1200)
Name: NF11959_high_2
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 1029; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1029; E-Value: 0
Query Start/End: Original strand, 18 - 1189
Target Start/End: Original strand, 54231345 - 54232517
Alignment:
| Q |
18 |
aatagaggtactaccatagcgggatttgttcatcgctattattctgggaattcgatacgctatttagtacaaagtattgttaagtagcggctatagtggc |
117 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54231345 |
aatagaggtactgccatagcgggatttgttcatcgctattattctgggaattcgatacgctatttagtacaaagtattgttaagtagcggctatagtggc |
54231444 |
T |
|
| Q |
118 |
actattttccgcgattcactattgacaggattggattatata-atatcaagggcatctcctatcctacaatgccattgtatttttaagaacttaagtctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54231445 |
actattttccgcgattcactattgacaggattggattatatagatatcaagggcatctcctatcctacaatgccattgtatttttaagaacttaagtctt |
54231544 |
T |
|
| Q |
217 |
aaacaactatcactctaacactacaaaactttaagaccttcaaatggatctaacaaattctacatatttatatttctgtaaaatgggttccacgtgttac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54231545 |
aaacaactatcactctaacactacaaaactttaagacctacaaatggatctgacaagttctacatatttatatttctgtaaaatgggttccacgtgttac |
54231644 |
T |
|
| Q |
317 |
acgaggtactcacattatcctcttctaatagtgaaacttgtaagaaccaatcctatacctttaaacaccgacactggaaacgtgtcagtttgttttttgc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
54231645 |
acgaggtactcacattatcctcttctaatagtgaaacttgtaagaaccaatcctatacctttaaaaaccgacactggaaatgtgtcagtttgttttttgc |
54231744 |
T |
|
| Q |
417 |
tcaagcgggttccttgtgaaactatgacgatgtcaggactcacaatagcttaggttattagcacccatcgttgttaatagtacacagataaattgaaagg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
54231745 |
tcaagcgggttccttgtgaaactatgacggtgtcaggactcacaatagcttaggttattagcactcatcgttgttaatagtacacagataaattgaaagg |
54231844 |
T |
|
| Q |
517 |
atcaaatatatgggaaaggaaaaccaccggaaaatgagaataatgttatcttttggtctcttgttgtccaacaaagcctggcagatcactaaatgttgca |
616 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54231845 |
atcaaatatatgggaaaag-aaaccaccggaaaatgagaataatgttatcttttggcctcttgttgtccaacaaagcctggcagatcactaaatgttgca |
54231943 |
T |
|
| Q |
617 |
-ggggtcaccatgttgttccattgataactatgacttccaatcatttccaatgtagggaaatctttacttgcccatgtcttctttttattacattctcta |
715 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
54231944 |
gggggtcaccatgttgttccgttgataactatgacttccaatcatttccaatgtagggaaatctttacttgcccatgttttctttttattacattctcta |
54232043 |
T |
|
| Q |
716 |
tctccatgtagttattgttagtatacacgaaacataagtagttagctctagggtgaactgtcctagggtacaagtaactatcaactacggattttggcca |
815 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54232044 |
tctccatgtagttattgttagtctacacgaaacataagtagttagctctagggtgaactgtcctagggtacaagtaactatcaactacggattttggcca |
54232143 |
T |
|
| Q |
816 |
agttgnnnnnnntgttaaattcattctctgataaattgaaatgttggaccaaatgtgtgctaatgctatactcatgtccaatatctatatttgaagacat |
915 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54232144 |
agttgaaaaaaatgttaaattcattctctgataaatagaaatgttggaccaaatgtgtgctaatgctatactcatgtccaatatctatatttgaagacat |
54232243 |
T |
|
| Q |
916 |
aagtattgaatttaatggaggcaagtaactggaaattgttcgtggtgacctagattgaattgtgagttgtgacagattgatcggtgcagttaagtagaaa |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54232244 |
aagtattgaatttaatggaggcaagtaactggaaattgttcgtggtgacctagattgaattgtgagttgtgacagattgatcggtgcagttaagtagaaa |
54232343 |
T |
|
| Q |
1016 |
attaaataatgccaagccttccatttaacttctgttaacttctttttggtctagaagtggtagttaaactacgatgtgagnnnnnnnnnnnncatttgtt |
1115 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
54232344 |
actaaataatgccaagccttccatttaacttctgttaacttctttttggtctagcagtggtagttaaactacgatgtgagttttttatttttcatttgtt |
54232443 |
T |
|
| Q |
1116 |
gtcaatattttggaattgagaagttagcagaatctgtgaagttacaaccaatcattttatcgaatattttgatg |
1189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54232444 |
gtcaatattttggaattgagaagttagcagaatctgtgaagttacaaccaatcattttatcgaatattttgatg |
54232517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 32612496 - 32612444
Alignment:
| Q |
70 |
cgatacgctatttagtacaaagtattgttaagtagcggctatagtggcactat |
122 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| ||||||| ||||| |||| |
|
|
| T |
32612496 |
cgatacgctatttagtacaaaatattgtgaagtaccggctatggtggcgctat |
32612444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 7245984 - 7245942
Alignment:
| Q |
70 |
cgatacgctatttagtacaaagtattgttaagtagcggctata |
112 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||| |
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|
| T |
7245984 |
cgatacgctatttagtacaaagtgttgtcaaatagcggctata |
7245942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 26850773 - 26850728
Alignment:
| Q |
72 |
atacgctatttagtacaaagtattgttaagtagcggctatagtggc |
117 |
Q |
| |
|
||||||||||||||||||||| | || || |||||||||||||||| |
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|
| T |
26850773 |
atacgctatttagtacaaagtgtagtcaaatagcggctatagtggc |
26850728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 11530055 - 11530107
Alignment:
| Q |
70 |
cgatacgctatttagtacaaagtattgttaagtagcggctatagtggcactat |
122 |
Q |
| |
|
|||||| |||||||||||| | |||||| || ||||||||||||||||||||| |
|
|
| T |
11530055 |
cgatacactatttagtacataatattgtgaaatagcggctatagtggcactat |
11530107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 28804368 - 28804414
Alignment:
| Q |
76 |
gctatttagtacaaagtattgttaagtagcggctatagtggcactat |
122 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||| |||||| |
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|
| T |
28804368 |
gctatttagtacaaagtattgtcaaataacggctatagtgacactat |
28804414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 27483078 - 27483129
Alignment:
| Q |
71 |
gatacgctatttagtacaaagtattgttaagtagcggctatagtggcactat |
122 |
Q |
| |
|
|||||||||| |||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
27483078 |
gatacgctatccagtacaaaatattgtcaaatagcggctatagtggcactat |
27483129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 739700 - 739750
Alignment:
| Q |
72 |
atacgctatttagtacaaagtattgttaagtagcggctatagtggcactat |
122 |
Q |
| |
|
||||||||| ||||||||| |||||| || |||| |||||||||||||||| |
|
|
| T |
739700 |
atacgctatatagtacaaaatattgtcaaatagcagctatagtggcactat |
739750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 631526 - 631473
Alignment:
| Q |
70 |
cgatacgctatttagtacaaagtattgttaagtagcggctatagtggcactatt |
123 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||||||||||| |||||||| |
|
|
| T |
631526 |
cgatacgctatttagtacaaaatattgtcatatagcggctatagctgcactatt |
631473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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