View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_23 (Length: 396)
Name: NF11959_high_23
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 69 - 298
Target Start/End: Complemental strand, 50649989 - 50649778
Alignment:
| Q |
69 |
tccccccttttttctatttacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaagtcgttatttnnnnnnntttaacatagaattacgatc |
168 |
Q |
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| T |
50649989 |
tccccccttttttctatgtacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaaatcgttatttccccccctttaacatagaattacgatc |
50649890 |
T |
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| Q |
169 |
tgtgtttcaagttaaaactataaatttttgtttaggatcttgttgattttaagtttttgatcataatcaagaaatcagaaatttcagctgcttaattctt |
268 |
Q |
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|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50649889 |
tgggtatcaagttaaaactataaatttttg------------------ttaagttcttgatcataatcaagaaatcagaaatttcagctgcttaattctt |
50649808 |
T |
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| Q |
269 |
gttcgagtataagtctataaagcttgaatc |
298 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50649807 |
gttcgagtataagtctataaagcttgaatc |
50649778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 117 - 298
Target Start/End: Complemental strand, 50660371 - 50660193
Alignment:
| Q |
117 |
gactttgtctggcaagtcgttatttnnnnnnntttaacatagaattacgatctgtgtttcaagttaaaactataaatttttgtttaggatcttgttgatt |
216 |
Q |
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| T |
50660371 |
gactttgtctggcaaatcgttatttttccc--tttaacatagaattatgatatgggtttcaagttaaaactataaatttttgctcaggatcttgttgatt |
50660274 |
T |
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| Q |
217 |
ttaagtttttgatcataatcaagaaatcagaaatttcagctgcttaattcttgttcgagtataagtctataaagcttgaatc |
298 |
Q |
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| T |
50660273 |
ttatgtttttgatcatatccaagaaatcagaaatttcagttgcttaattattgttcgagt-taagtctataaagcttgaatc |
50660193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 50660529 - 50660378
Alignment:
| Q |
149 |
tttaacatagaattacgatctgtgtttcaagttaaaactataaatttttgtttaggatcttgttgattttaag---tttttgatcataatcaagaaatca |
245 |
Q |
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||||||||||||||| ||| || |||| |||| ||||||| | ||||| |||| |||||||||||||| ||| ||||| ||||||| | |||||||| |
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| T |
50660529 |
tttaacatagaattatgatttgggttttaagtcaaaactagatttttttttttaagatcttgttgatttgaagtttttttttatcataacccagaaatca |
50660430 |
T |
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| Q |
246 |
gaaatttcagctgcttaattcttgttcgagtataagtctataaagcttgaatc |
298 |
Q |
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| T |
50660429 |
gaaatttcaattgcttaattcttgtttgagt-taagtctataaagcttaaatc |
50660378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 50649751 - 50649697
Alignment:
| Q |
325 |
ctactcttcagatcatggacacttcaaatcctgctgcatttgtcgatgcccaagt |
379 |
Q |
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| T |
50649751 |
ctactcttcagatcatggacacttcaaatcctgctgcatttgtcaatgcccaagt |
50649697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 50650593 - 50650546
Alignment:
| Q |
21 |
ttccgctctccatatacaaaatatacttttt-aagggtttctcttccg |
67 |
Q |
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| T |
50650593 |
ttccgctctccatatacaaaatatactttttaaagggtttctcttccg |
50650546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 50660150 - 50660109
Alignment:
| Q |
338 |
catggacacttcaaatcctgctgcatttgtcgatgcccaagt |
379 |
Q |
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| T |
50660150 |
catggacacttcaaatcctgctgcatttgtcaatgcccaagt |
50660109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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