View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_24 (Length: 395)
Name: NF11959_high_24
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 31331814 - 31331427
Alignment:
| Q |
1 |
tctcaaatatgaagttaaggacttttttgtcatcaaggttttgagtttattcatttttccatgttgggaaattgctcacatggcaagctgacaaaaatgg |
100 |
Q |
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| T |
31331814 |
tctcaaatatgaagttaaggacttttttgtcatcaaggttttgagtttattcatttttccatgttgggaaattgctcacatggcaagctgacaaaaatgg |
31331715 |
T |
|
| Q |
101 |
tttatgtgtattggctaaaagaaggaacaatagttatctattgagaattttgggtccatccttaaatgtgacccctacatcccatgctctgaaagttata |
200 |
Q |
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| T |
31331714 |
gttatgtgtattggctaaaagaaggaacaatagttatctattgagaattttgggtccatccttaaatgtgacccctacatcccatgctctgaaagttata |
31331615 |
T |
|
| Q |
201 |
cacatcagggcctaaatccaaattgtctagggttttcttctcacaaatattaaattatcttatacagaatatcataacctcaattatgaactataaagca |
300 |
Q |
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| T |
31331614 |
cacatcagggcctaaatccaaattgtctagggttttcttctcacaaatattaaattatcttatacaaaatatcataacctcaattacgaactatgaagca |
31331515 |
T |
|
| Q |
301 |
tatacacatgttaatattgtaactttaattaggaactatgaagcacatatacagaaacatattatacatgacacaaacacgtaaacac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||||||||||||| |
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| T |
31331514 |
tatacacatgttaatattgtaactttaattaggaactatgaaacatatgtacagaaacatattatacacgacacaaacacgtaaacac |
31331427 |
T |
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