View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_3 (Length: 799)
Name: NF11959_high_3
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 71 - 781
Target Start/End: Complemental strand, 32620634 - 32619921
Alignment:
| Q |
71 |
gttgaacacaccactttttaacaatttccattacaaaagttatgtattaatcttcttaactattgt---ctcaggacactaatgagtatagtcaataaca |
167 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
32620634 |
gttgaacacgctactttttaacaatttccaatacaaaatttatgtattaatctccttaactattgttgtctcaggacactaatgagtatattcaataaca |
32620535 |
T |
|
| Q |
168 |
tgttatatgatttacttgtattagccatgaattaaaatattgtttgaaagtacatttctcaaaacatatatgattttttaaaaatgtggcatagagggga |
267 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
32620534 |
tgttatatgatttacttgtaatagccatgaattaaaatattgtttgaaagtacatttatcaaaacatgtatgattctttaaaaatgtggcatagagggga |
32620435 |
T |
|
| Q |
268 |
aaaagttcctcactaacgtgatgatatctactaactaagtggtgttgtgcatggaaatgattgagatcgtgagtattgaaatgtttggaaaatgtataag |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32620434 |
aaaagttcctcactaacgtgatgatatctacaaactaagtggtgttgtgcatggaaatgattgagatcgtgagtattgaaatgtttggaaaatgtataag |
32620335 |
T |
|
| Q |
368 |
agtttgattttgattttgataagtaaatataaaatgtttaattatgcaattgtatttgttttgaaacttacaaatatcatacttgaagtatgttaaaagt |
467 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32620334 |
agtttgattttgattttggcaagtaaatataaaatgtttaattaagcaattgtatttgttttgaaacttagaaatatcatacttgaagtatgttaaaagc |
32620235 |
T |
|
| Q |
468 |
gtcctcaatctaaacaccaaactaccacatcatacaaaatgtatgatgcctgtttcagtcgtgaaaataaccactaccttctccatatcaagtatataaa |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32620234 |
gtcctcaatctaaacaccaaactaccacatcatgcaaaatgtatgatacctgttttagtcatgaaaataaccaccaccttctccatatcaagtatataaa |
32620135 |
T |
|
| Q |
568 |
cgttgatagcttcaatatctttcattcacaaacaactagcttagagaaacttgtgaaacaaaccaacaaaagcaagctaagtttaacaatgactctacaa |
667 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32620134 |
cgttgatagcttcaatatctttcattcacaaacaactagcttagagaaacttgtgaaacaaaccaacaaaagcaagcctagtttaacaatgactctacaa |
32620035 |
T |
|
| Q |
668 |
agcaagcaaatgatcctaattcttggaatgcttatgctgatttcattagcaactgccgaagaggttggcctaaaagccaatatggtacaatgtcttagca |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32620034 |
agcaagcaaatgatcctaattcttggaatgcttatgctgatttcattagcaactgccgaagaggttggcctaaaagccaatctggtacaatgtcttagca |
32619935 |
T |
|
| Q |
768 |
aatgtggggatgat |
781 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32619934 |
aatgtggggatgat |
32619921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 506 - 781
Target Start/End: Complemental strand, 32617164 - 32616889
Alignment:
| Q |
506 |
atgtatgatgcctgtttcagtcgtgaaaataaccactaccttctccatatcaagtatataaacgttgatagcttcaatatctttcattcacaaacaacta |
605 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||| |||||||||||| |||||||||||| || || ||| |||||||||||||||||||||||| || |
|
|
| T |
32617164 |
atgtatgatacctgtttcagtcgtgaagatgaccaccaccttctccataacaagtatataaatgtagagagcatcaatatctttcattcacaaacaatta |
32617065 |
T |
|
| Q |
606 |
gcttagagaaacttgtgaaacaaaccaacaaaagcaagctaagtttaacaatgactctacaaagcaagcaaatgatcctaattcttggaatgcttatgct |
705 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32617064 |
gcttagagtaacttgtgaaactaaccaacaaaagcaagcttagtttaacaatgactctacaaagcaagcaaatgatcctaatttttggaatgcttatgct |
32616965 |
T |
|
| Q |
706 |
gatttcattagcaactgccgaagaggttggcctaaaagccaatatggtacaatgtcttagcaaatgtggggatgat |
781 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
32616964 |
gatttcattagcaactgccgaagaggttggcctaaaagccaatctagtacaatgtcttggcaaatgtggggatgat |
32616889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University