View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_32 (Length: 372)
Name: NF11959_high_32
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_32 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 106 - 372
Target Start/End: Complemental strand, 52824640 - 52824374
Alignment:
| Q |
106 |
gatatgatagtttgatgatgtgaaaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgnn |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824640 |
gatatgacagtttgatgatgtgaaaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgat |
52824541 |
T |
|
| Q |
206 |
nnnnnnnnnnnataagatgtgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824540 |
atatatatataataagatgtgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgat |
52824441 |
T |
|
| Q |
306 |
ctgttatccattttttcagaataatacagtggtgcttgaggaacacagatcctacgcatgctctcgc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824440 |
ctgttatccattttttcagaataatacagtggtgcttgaggaacacagatcctacgcatgctctcgc |
52824374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52824755 - 52824696
Alignment:
| Q |
1 |
aaaatattcatactagagctacatcaacgttttgtgtaca-ccctgtagtgtatacatct |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52824755 |
aaaatattcatactagagctacatcaacgttttgtgtacacccctgtagtgtatacatct |
52824696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University