View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_42 (Length: 287)
Name: NF11959_high_42
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 45 - 276
Target Start/End: Original strand, 17991838 - 17992061
Alignment:
| Q |
45 |
ggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttctagcttcatatgttgttgtcttgtctaatcaattt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17991838 |
ggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttctagcttcatatgttgttgtcttgtctaatcaattt |
17991937 |
T |
|
| Q |
145 |
aaggttttgaagttcttgtcaattatgcatcaatgatcaatttattgttatttctagtttgtaacccaactctttgtagtgcaatattctatcatcttat |
244 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
17991938 |
aaggttttcaagttcttgtcaattatgcatcgatgatcaatttattgttatttctagtttgtaacccaactc-ttgtagtgca-------atcatcttat |
17992029 |
T |
|
| Q |
245 |
cgtgtaattttgtagctatctttcaagttcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17992030 |
cgtgtaattttgtagctatctttcaagttcat |
17992061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 17991794 - 17991822
Alignment:
| Q |
8 |
tagtttaggtagtcctaggttttgagtcg |
36 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17991794 |
tagtttaggtagtcctaggttttgagtcg |
17991822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 12450316 - 12450361
Alignment:
| Q |
231 |
ttctatcatcttatcgtgtaattttgtagctatctttcaagttcat |
276 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
12450316 |
ttctatgatcttatcatgtaattttgtagctacctttcaagttcat |
12450361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University