View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_54 (Length: 254)
Name: NF11959_high_54
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49008154 - 49007916
Alignment:
| Q |
1 |
acacttggtgctggttttgtacctaaaacagttttattaaattgcatgcttgcttttggattagtattgcacttaatgaaatccttgataagttctccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008154 |
acacttggtgctggttttgtacctaaaacagttttattaaattgcatgcttgcttttggattagtattgcacttaatgaaatccttgataagttctccat |
49008055 |
T |
|
| Q |
101 |
taattggattcnnnnnnntagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaacacccgcaacaacttttattct |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008054 |
taattggattcaaaaaaatagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaacacccgcaacaacttttattct |
49007955 |
T |
|
| Q |
201 |
gtccaagttatccacttgagtagcaagtgttcggttctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49007954 |
gtccaagttatccacttgagtagcaagtgttcggttctt |
49007916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University