View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_high_6 (Length: 605)
Name: NF11959_high_6
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 39729142 - 39729729
Alignment:
| Q |
1 |
tgaatacgtaatcaacccttacatactcatatgtacgtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaataatagatggaataattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
39729142 |
tgaatacgtaatcaacccttacatactcatatgtaggtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaataatggatggaataatat |
39729241 |
T |
|
| Q |
101 |
annnnnnnnctttctaaaaatgaaatttaaatt------gatttcaaattggagttttgttaatcaaacatgatgttttgattttannnnnnn---ggta |
191 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39729242 |
tttttttttctttctaaaaatgaaatttaaatttaaattgatttcaaattggagttttgttaatcaaacatgatgttttgatttttttttttttttggta |
39729341 |
T |
|
| Q |
192 |
caagatattttgatttctttaacttgacaaaattagagatcattatttcaacaaacttgcttgtaatactcagattcgatttattcctctaatttatata |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39729342 |
caagatattttgatttctttaacttgacaaaattagagatcattatttcaacaaacttgcttgtaatactcagattcgatttattactctaat------- |
39729434 |
T |
|
| Q |
292 |
ttgttcatttgagaaatcccagatccaacaaagaagcaaaatgaaaatttagaaagtgcaataatctaaaaactctcaaaagataattttacaaatggaa |
391 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729435 |
--gttcatttcagaaatcccagatccaacaaagaagcaaaatgaaaatttagaaagtgcaataatctaaaaactctcaaaagataattttacaaatggaa |
39729532 |
T |
|
| Q |
392 |
agcaaaactaaaa-aacaatttcttatcatatataaagcaaattatggaactcctttgctattaacagcattagcagcattgaatttagcctcagaggaa |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729533 |
agcaaaactaaaaaaacaatttcttatcatatataaagcaaattatggaactcctttgctattaacagcattagcagcattgaatttagcctcagaggaa |
39729632 |
T |
|
| Q |
491 |
acattagcaccagaaagagttggtgcctctgtggcaccagctccacgacctggctgtggttgttggtgaccttgtgtgccatatccttgacgcttat |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729633 |
acattagcaccagaaagagttggtgcctctgtggcaccagctccacgacctggctgtggttgttggtgaccttgtgtgccatatccttgacgcttat |
39729729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 463 - 587
Target Start/End: Original strand, 35175624 - 35175748
Alignment:
| Q |
463 |
agcagcattgaatttagcctcagaggaaacattagcaccagaaagagttggtgcctctgtggcaccagctccacgacctggctgtggttgttggtgacct |
562 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||| |||| ||||||||| |||||| |
|
|
| T |
35175624 |
agcagcattgaattgggcttgagaggaaacattagcaccagaaagagtagctgcctcagtggcaccaggtccacgaccaggctttggttgttgatgacct |
35175723 |
T |
|
| Q |
563 |
tgtgtgccatatccttgacgcttat |
587 |
Q |
| |
|
|| || ||||| ||||||| ||||| |
|
|
| T |
35175724 |
tgagtaccataaccttgacacttat |
35175748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University