View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_61 (Length: 240)
Name: NF11959_high_61
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_61 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17795431 - 17795655
Alignment:
| Q |
18 |
cttctttgttgtgaaaaaggacataagtttcaatcattgcagccacgctccaaatccaattata--taatttaagcaaaacttgtacgggtagagaagtt |
115 |
Q |
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| T |
17795431 |
cttctttgttgtgaaaaaggacataagtttcaatcattgcagccacgctccaaatccaattatatataatttaagcaaaacctgtacgggtagagaagtt |
17795530 |
T |
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| Q |
116 |
tcaggtacttgtttgtctttatgattcctgacctagctggagggacaaatacacaaaccaaaacaaattttaaatttcccactagagaataagttgttta |
215 |
Q |
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| T |
17795531 |
tcaggtacttgtttgtctttatgattcctcacctagctggagggacaaatacacaaaccaaaacaaattttaaatttcccactagagaataagctgttta |
17795630 |
T |
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| Q |
216 |
ggcaagttaggaaagaaaattactt |
240 |
Q |
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| T |
17795631 |
ggcaagttaggaaagaaaattactt |
17795655 |
T |
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