View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_9 (Length: 516)
Name: NF11959_high_9
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 2828976 - 2829457
Alignment:
| Q |
16 |
gaattgacatttatactcttaaaaaacaattgtttnnnnnnnntggattcaaggaattttaccgtgaaaccctaatagtggacacgataggggtctgaag |
115 |
Q |
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| T |
2828976 |
gaattgacatttatactcttaaaaaacaattgtttaaaaaaaatggattcgaggaattttaccgtgaaaccctaatagtgga-----taggggtctgaag |
2829070 |
T |
|
| Q |
116 |
acacaaattctccgcaacaaccactattgttggcggtggctcgcaggccaaaagtatcgcgtcatcaatccgaccacctctacaccattccaccatagca |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2829071 |
acacaaattctccacaacaaccactattgttggcggtggctcgcaggccaaaagtatcgcgtcatcaatccgaccacctctatgccattccaccatagca |
2829170 |
T |
|
| Q |
216 |
ccgctatagcgtgctaatgacaacataaatgccaagaagaaatattttgtaacctaaagagcctttgaaccaggaatgtcaatccaatgcaattgaatct |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829171 |
ccgctatagcgcgctaatgacaacataaatgccaagaagaaatattttgtaacctaaagagcctttgaaccaggaatgtcaatccaatgcaattgaatct |
2829270 |
T |
|
| Q |
316 |
ccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttg |
415 |
Q |
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| T |
2829271 |
ccacttccccacattcaacatttcttaatctaagaaccaacttttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttg |
2829370 |
T |
|
| Q |
416 |
tctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatctttactgcttccacaaatggactgatgtc |
502 |
Q |
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| T |
2829371 |
tctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatctttactgcttccacaaatggactgatgtc |
2829457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 258 - 502
Target Start/End: Original strand, 30182548 - 30182792
Alignment:
| Q |
258 |
tattttgtaacctaaagagcctttgaaccaggaatgtcaatccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaagt |
357 |
Q |
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| T |
30182548 |
tatttggtaacctacataacctttgaaccaggaatgtcaacccagtgcaactggagttccacttccccacattcgacatttcttagtctaagaaccatgt |
30182647 |
T |
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| Q |
358 |
tttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggag |
457 |
Q |
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| T |
30182648 |
tttggaaaattttaccatctttccaaacaatgtgactctcttctgctaagcaattttgtctgctaggttgcacccttgtaactatagcctcatttgggag |
30182747 |
T |
|
| Q |
458 |
accttgcaaccgcatctttactgcttccacaaatggactgatgtc |
502 |
Q |
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| T |
30182748 |
acctgccaaccgcatcttcactgcttcaaaaaatgggccgatgtc |
30182792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 347 - 502
Target Start/End: Original strand, 30055138 - 30055293
Alignment:
| Q |
347 |
aagaaccaagttttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagta |
446 |
Q |
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| T |
30055138 |
aagaatcatgttttggaaaattttaccatctttctaaacaatgtaactctcttctgctaagcagttttgtctactaggttgcaccctcgtaactataacc |
30055237 |
T |
|
| Q |
447 |
tcatttgggagaccttgcaaccgcatctttactgcttccacaaatggactgatgtc |
502 |
Q |
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| T |
30055238 |
tcgtttgggagacctgtcaaccgcatctttactgcttcaaaaaatgggccgatgtc |
30055293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 391 - 479
Target Start/End: Original strand, 30181204 - 30181292
Alignment:
| Q |
391 |
gactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatctttact |
479 |
Q |
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| T |
30181204 |
gactctcttctgctaagcagttttgtctgctaggttggacccttgtaaccatagtatcgtttgggagaccttccaaccgcatctttact |
30181292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 30129079 - 30129148
Alignment:
| Q |
315 |
tccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccat-ttttcaaa |
383 |
Q |
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| T |
30129079 |
tccacttcctcacattcaacatttcttagtctaagaaccatgttttggaaaattttaccatcttttcaaa |
30129148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 45348613 - 45348535
Alignment:
| Q |
297 |
atccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccat |
375 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| || | | |||||||||||| |||| |
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| T |
45348613 |
atccattgcaattgaatttccacttcaccacattcaacatttctcaatctaaggacaacatcttggacaactttgccat |
45348535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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