View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_low_1 (Length: 1611)

Name: NF11959_low_1
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_low_1
NF11959_low_1
[»] chr8 (3 HSPs)
chr8 (1-1589)||(29650086-29651684)
chr8 (1477-1589)||(29651708-29651820)
chr8 (1477-1514)||(29651844-29651881)
[»] chr4 (3 HSPs)
chr4 (857-916)||(5078943-5079002)
chr4 (760-820)||(5078944-5079004)
chr4 (1523-1580)||(27131668-27131725)
[»] chr7 (2 HSPs)
chr7 (847-916)||(5560978-5561047)
chr7 (73-118)||(36853096-36853142)
[»] chr1 (2 HSPs)
chr1 (770-823)||(42955646-42955699)
chr1 (771-822)||(19809069-19809120)
[»] chr6 (7 HSPs)
chr6 (776-823)||(27368597-27368644)
chr6 (776-823)||(27458944-27458991)
chr6 (85-124)||(29872545-29872584)
chr6 (1528-1579)||(32931491-32931542)
chr6 (1523-1580)||(2468468-2468525)
chr6 (69-117)||(8782995-8783044)
chr6 (1531-1580)||(16295535-16295584)
[»] chr3 (3 HSPs)
chr3 (1529-1580)||(14032926-14032977)
chr3 (1467-1501)||(10794606-10794640)
chr3 (760-822)||(21144013-21144075)
[»] chr2 (1 HSPs)
chr2 (846-916)||(42467863-42467933)
[»] chr5 (1 HSPs)
chr5 (69-117)||(16230760-16230809)


Alignment Details
Target: chr8 (Bit Score: 1396; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 1396; E-Value: 0
Query Start/End: Original strand, 1 - 1589
Target Start/End: Original strand, 29650086 - 29651684
Alignment:
Q  1 tacattctcatggtaaataatttttacactttcgatcgatctttattgtcgataattgaaaacgttcaactttaatcataactacattaaagtcatacat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650086 tacattctcatggtaaataatttttacactttcgaccgatctttattgtcgataattgaaaacgttcaactttaatcataactacattaaagtcatacat 29650185  T
Q  101 atgattggttgtgatttatgacagatagaatggtgtaaaagagacagatatttagacaagcatatctaattttcatgtgtatgattttaggccatccttt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29650186 atgattggttgtgatttatgatagatagaatggtgtaaaagagacagatatttagacaagcatatctaattttcatgtgtatgattttaggccatgcttt 29650285  T
Q  201 ggggaagacatgaattatatgattattggccacttgaaattgttggtaacaatttgagttgcaaacgacaactagtggccaacatctcaacatgatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29650286 ggggaagacatgaattatatgattattggccacttgaaattgttggtaacaatttgagttgcaaaggacaactagtggccaacatctcaacatgatttat 29650385  T
Q  301 tatattgtgagcaccaaatatattctttcatcaaaggatgacatgatagaagtaagacatttttgttgatagttttgatttgtgtctattgtttaccttg 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650386 tatattgtgagcaccaaatatattctttcatcaaaggttgacatgatagaagtaagacatttttgttgatagttttgatttgtgtctattgtttaccttg 29650485  T
Q  401 tctgagttgttgaaatatgaactctcaactactttgagatagattggaagaatttgcttttctgtgacctgaaggagaagaaatcataagaattgctttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650486 tctgagttgttgaaatatgaactctcaactactttgagatagattggaagaatttgcttttctgtgacctgaaggagaagaaatcataagaattgctttt 29650585  T
Q  501 gttattaacacctctaatatgaaaaacttcnnnnnnnaatataaattgtggactctctaattcactttaccttgccaaatttcttcagaatctttataaa 600  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29650586 gttattaacacctctaatatgaaaaacttctttttttaatataaattgtggactctctaattcactttaccttgtcaaatttcttcagaatctttataaa 29650685  T
Q  601 tgcaagcaggttcaaattcctaaaaa-tcaatatgatgaagaaaacagtcacataannnnnnnnnnnncatatcaaatttaacacttattgtaagttcat 699  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  29650686 tgcaagcaggttcaaattcctaaaaaatcaatatgatgaagaaaacagtcacataatttattttttttcatatcaaatttaacacttattgtaagttcat 29650785  T
Q  700 tattnnnnnnnnnnn-tactttgactcacaaaatttacatcgaatttagataaaggctaaaatggttactgcaattcaaatatatggttaattacgttta 798  Q
    ||||            ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29650786 tattaaaaaaaaaatatactttgactcacaaaattgacatcgaatttcgataacggctaaaatggttactgcaattcaaatatatggttaattacgttta 29650885  T
Q  799 ttagataattaataaatataacaaaatatttcaacttattaactatttgacaccttgctatattcactaaacatttactaaacgtaattaaccacaaatt 898  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650886 ttagataattaataaatataacaaaatatttcaacttattaaccatttgacaccttgctatattcactaaacatttactaaacgtaattaaccacaaatt 29650985  T
Q  899 taaactgcattaaccatcaatttattgtcgaaattttatttcaaaagtgagtatcaaaataacaaaaatcttaaaaatttagttatatttgtgatgaaag 998  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650986 taaactgcattaaccatcaatttattgtctaaattttatttcaaaagtgagtatcaaaataacaaaaatcttaaaaatttagttatatttgtgatgaaag 29651085  T
Q  999 aaaatttgaattatacctataatcattcaaatatcctaggcccttataaagctcaatgaaaccacctttgatcatcttttctgcatgatgtaaccttgtt 1098  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29651086 aaaatttgaattatacctataatcattcaaatatcctaggcccttataaagctcaatgaaaccacctttgatcatcttttctgcatgatgcaaccttgtt 29651185  T
Q  1099 ttattaacacgaagcacaccaccttctggattgcattttcttgaagacttattgaacaaatcttccattacaaggtaactaatttctgaaaaggtttgag 1198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651186 ttattaacacgaagcacaccaccttctggattgcattttcttgaagacttattgaacaaatcttccattacaaggtaactaatttctgaaaaggtttgag 29651285  T
Q  1199 aaggtgttgtcaaaggaatgtttatcctcacattctttccttggccactaagaaaatggccagataatgtcctcaatttaccatcttcccatttcaaatc 1298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651286 aaggtgttgtcaaaggaatgtttatcctcacattctttccttggccactaagaaaatggccagataatgtcctcaatttaccatcttcccatttcaaatc 29651385  T
Q  1299 cattgatttatcctcttcattttcatttgattcagtaaaattctcttctattttctccaaatcctctgtttgttctctgctcctaacagagtcttcctct 1398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651386 cattgatttatcctcttcattttcatttgattcagtaaaattctcttctattttctccaaatcctctgtttgttctctgctcctaacagagtcttcctct 29651485  T
Q  1399 gcatccagtatacagagtattagattcacattcacatcataaataa--------atttaaaacatatgatatattctagcaccgacacttcatattgaag 1490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||| |||||||||||| ||     
T  29651486 gcatccagtatacagagtattagattcacattcacatcataaataaataaatatatttaaaacatataatatattctagcaccaacacttcatattaaat 29651585  T
Q  1491 gcgtgttcagtatccaatatgtgttagtgtctaacatgacaccaacacatgttgttacgtttaatcacttctattttcttaaaatattactagcgtcta 1589  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651586 gcgtgttcagtatccaatatgtgttagtgtctaacatgacactaacacatgttgttacgtttaatcacttctattttcttaaaatattactagcgtcta 29651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 5e-35
Query Start/End: Original strand, 1477 - 1589
Target Start/End: Original strand, 29651708 - 29651820
Alignment:
Q  1477 acttcatattgaaggcgtgttcagtatccaatatgtgttagtgtctaacatgacaccaacacatgttgttacgtttaatcacttctattttcttaaaata 1576  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  29651708 acttcatattgaaggcgtgttcagtgtccaacatgtgtcagtgtctgacacgacaccaacacatgttgttacgttcaatcacttctattttcttaaacta 29651807  T
Q  1577 ttactagcgtcta 1589  Q
    ||| |||| ||||    
T  29651808 ttaatagcatcta 29651820  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1477 - 1514
Target Start/End: Original strand, 29651844 - 29651881
Alignment:
Q  1477 acttcatattgaaggcgtgttcagtatccaatatgtgt 1514  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  29651844 acttcatattgaaggcgtgttcagtgtccaacatgtgt 29651881  T

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Target: chr4 (Bit Score: 36; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 857 - 916
Target Start/End: Complemental strand, 5079002 - 5078943
Alignment:
Q  857 tatattcactaaacatttactaaacgtaattaaccacaaatttaaactgcattaaccatc 916  Q
    |||||||||||| ||| ||||||| ||||||||||| | |||| ||||||||||||||||    
T  5079002 tatattcactaatcatctactaaatgtaattaaccatatatttgaactgcattaaccatc 5078943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 760 - 820
Target Start/End: Original strand, 5078944 - 5079004
Alignment:
Q  760 atggttactgcaattcaaatatatggttaattacgtttattagataattaataaatataac 820  Q
    ||||||| |||| ||||||||||||||||||||| |||| ||||| |||| | ||||||||    
T  5078944 atggttaatgcagttcaaatatatggttaattacatttagtagatgattagtgaatataac 5079004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1523 - 1580
Target Start/End: Original strand, 27131668 - 27131725
Alignment:
Q  1523 aacatgacaccaacacatgttgttacgtttaatcacttctattttcttaaaatattac 1580  Q
    |||| ||||||||||||||| ||||| || ||| ||||| ||||||||||| ||||||    
T  27131668 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 27131725  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 847 - 916
Target Start/End: Original strand, 5560978 - 5561047
Alignment:
Q  847 gacaccttgctatattcactaaacatttactaaacgtaattaaccacaaatttaaactgcattaaccatc 916  Q
    ||||||||| |||||||| ||| ||| || | |||||||||||||| | |||||||||||||||| ||||    
T  5560978 gacaccttgttatattcattaaccatctagtgaacgtaattaaccatatatttaaactgcattaatcatc 5561047  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 36853142 - 36853096
Alignment:
Q  73 taatcataactacat-taaagtcatacatatgattggttgtgattta 118  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||    
T  36853142 taatcataactacttctaaagtcacacatatgattggttgtgattta 36853096  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 823
Target Start/End: Original strand, 42955646 - 42955699
Alignment:
Q  770 caattcaaatatatggttaattacgtttattagataattaataaatataacaaa 823  Q
    ||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||    
T  42955646 caattcaaatacatgtttaattaggtttagtagatgattaataaatataacaaa 42955699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 771 - 822
Target Start/End: Complemental strand, 19809120 - 19809069
Alignment:
Q  771 aattcaaatatatggttaattacgtttattagataattaataaatataacaa 822  Q
    |||||||||| |||||||||||| |||| ||||| |||||| ||||||||||    
T  19809120 aattcaaatacatggttaattacatttagtagatgattaatgaatataacaa 19809069  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 776 - 823
Target Start/End: Complemental strand, 27368644 - 27368597
Alignment:
Q  776 aaatatatggttaattacgtttattagataattaataaatataacaaa 823  Q
    |||||||||||||||||||| || ||||| |||||| |||||||||||    
T  27368644 aaatatatggttaattacgtgtagtagatgattaatgaatataacaaa 27368597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 776 - 823
Target Start/End: Complemental strand, 27458991 - 27458944
Alignment:
Q  776 aaatatatggttaattacgtttattagataattaataaatataacaaa 823  Q
    |||||||||||||||||||| || ||||| |||||| |||||||||||    
T  27458991 aaatatatggttaattacgtgtagtagatgattaatgaatataacaaa 27458944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 29872545 - 29872584
Alignment:
Q  85 cattaaagtcatacatatgattggttgtgatttatgacag 124  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  29872545 cattaaagtcacacatatgattggttgtgatttttgacag 29872584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1528 - 1579
Target Start/End: Original strand, 32931491 - 32931542
Alignment:
Q  1528 gacaccaacacatgttgttacgtttaatcacttctattttcttaaaatatta 1579  Q
    |||||| |||||||| ||||  |||||||||||||||||||||||| |||||    
T  32931491 gacaccgacacatgtagttatatttaatcacttctattttcttaaattatta 32931542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1523 - 1580
Target Start/End: Original strand, 2468468 - 2468525
Alignment:
Q  1523 aacatgacaccaacacatgttgttacgtttaatcacttctattttcttaaaatattac 1580  Q
    |||| ||||||||||||||| ||||| || ||| ||||| ||||||||||| ||||||    
T  2468468 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 2468525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 8782995 - 8783044
Alignment:
Q  69 actttaatcataactacattaaa-gtcatacatatgattggttgtgattt 117  Q
    ||||||||||||||||| | ||| |||||| |||||||||||||||||||    
T  8782995 actttaatcataactacttcaaaagtcatatatatgattggttgtgattt 8783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1531 - 1580
Target Start/End: Complemental strand, 16295584 - 16295535
Alignment:
Q  1531 accaacacatgttgttacgtttaatcacttctattttcttaaaatattac 1580  Q
    |||||||||||| |||||||| |||||| |||||||||| ||| ||||||    
T  16295584 accaacacatgtagttacgttcaatcacctctattttctaaaattattac 16295535  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1529 - 1580
Target Start/End: Complemental strand, 14032977 - 14032926
Alignment:
Q  1529 acaccaacacatgttgttacgtttaatcacttctattttcttaaaatattac 1580  Q
    ||||||||| |||||||||   ||||||||||||||||||||||| ||||||    
T  14032977 acaccaacatatgttgttatacttaatcacttctattttcttaaattattac 14032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1467 - 1501
Target Start/End: Complemental strand, 10794640 - 10794606
Alignment:
Q  1467 tagcaccgacacttcatattgaaggcgtgttcagt 1501  Q
    |||||||||||||||||||||||| ||||||||||    
T  10794640 tagcaccgacacttcatattgaagacgtgttcagt 10794606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 760 - 822
Target Start/End: Complemental strand, 21144075 - 21144013
Alignment:
Q  760 atggttactgcaattcaaatatatggttaattacgtttattagataattaataaatataacaa 822  Q
    ||||||| ||||||||||||| ||||||||||| ||| | |||||  ||||| ||||||||||    
T  21144075 atggttaatgcaattcaaatacatggttaattatgttaagtagatggttaatgaatataacaa 21144013  T

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Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 846 - 916
Target Start/End: Original strand, 42467863 - 42467933
Alignment:
Q  846 tgacaccttgctatattcactaaacatttactaaacgtaattaaccacaaatttaaactgcattaaccatc 916  Q
    |||||||||| |||| ||  ||| |||  ||||||| |||||||||||| |||| ||||||||||||||||    
T  42467863 tgacaccttgttatactcgttaagcatccactaaacataattaaccacatatttgaactgcattaaccatc 42467933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 16230809 - 16230760
Alignment:
Q  69 actttaatcataactacat-taaagtcatacatatgattggttgtgattt 117  Q
    ||||||||||||||||| | |||| ||| |||||||||||||||||||||    
T  16230809 actttaatcataactacttctaaaatcaaacatatgattggttgtgattt 16230760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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