View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_13 (Length: 446)
Name: NF11959_low_13
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 33388910 - 33388481
Alignment:
| Q |
1 |
tggaggctgctattacgaaagtggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttg |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
33388910 |
tggaagctgctattacgaaagtggtagagattcacacgaaagaacctgctggagacatacttgtttttcttaccggagaggaagagatagaagatgcatg |
33388811 |
T |
|
| Q |
101 |
ccgaaaaatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33388810 |
ccgaaaaatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaag |
33388711 |
T |
|
| Q |
201 |
atttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388710 |
atttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatg |
33388611 |
T |
|
| Q |
301 |
gtatagtatatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388610 |
gtatagtatatgttattgaccctggatttgccaagcagaaggtttataatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctag |
33388511 |
T |
|
| Q |
401 |
tgcacaccagagatcaggtcgtgccggaag |
430 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
33388510 |
tgcacaccagagatcaggtcgtgccggaag |
33388481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 38779951 - 38779522
Alignment:
| Q |
1 |
tggaggctgctattacgaaagtggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttg |
100 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| | |||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
38779951 |
tggaggctgctattaggacagtggtgcagattcacatgtgtgaacctgctggagacatacttgtttttcttaccggagaggaggagatagaagatgcatg |
38779852 |
T |
|
| Q |
101 |
ccgaaaaatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaag |
200 |
Q |
| |
|
||| |||||||| || |||||||||| | ||||| |||||||||||||||||| | || | ||||| || ||||||||||||||||| |||||| |
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|
| T |
38779851 |
ccgcaaaatatctaaagaagttgcaaacatgggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaag |
38779752 |
T |
|
| Q |
201 |
atttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
38779751 |
atttttgagccagctccacctccagttaaggagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatg |
38779652 |
T |
|
| Q |
301 |
gtatagtatatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctag |
400 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||| ||| | || ||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38779651 |
gtatagtctatgttattgatcctggatttgctaagcagaaggtctataaccctcgagttcgtgttgagtctttgttggtgtctccaatatcaaaagctag |
38779552 |
T |
|
| Q |
401 |
tgcacaccagagatcaggtcgtgccggaag |
430 |
Q |
| |
|
|||||||||||| || || ||||| ||||| |
|
|
| T |
38779551 |
tgcacaccagaggtctggacgtgctggaag |
38779522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 20816194 - 20816596
Alignment:
| Q |
1 |
tggaggctgctattacgaaagtggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttg |
100 |
Q |
| |
|
||||||||||||| || || |||| ||||||||||| |||||||| |||| | | |||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
20816194 |
tggaggctgctatctggacagcggtgcagattcacacgcttgaacctgctggagacgtacttgtttttcttactggagaggaagagatagaagatgcatg |
20816293 |
T |
|
| Q |
101 |
ccgaaaaatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaag |
200 |
Q |
| |
|
|| |||||||| || ||||||||| | ||||| | |||||||||||||||||| || | ||||||| || |||||||| |||||||| || | | |
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|
| T |
20816294 |
tcgcaaaatatccaatgaagttgcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacagg |
20816393 |
T |
|
| Q |
201 |
atttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || ||| |
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|
| T |
20816394 |
atttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcaatg |
20816493 |
T |
|
| Q |
301 |
gtatagtatatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctag |
400 |
Q |
| |
|
||||||| |||||| ||||||||||||| || ||||||||||||||| | || ||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
20816494 |
gtatagtctatgttgttgaccctggattggctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctag |
20816593 |
T |
|
| Q |
401 |
tgc |
403 |
Q |
| |
|
||| |
|
|
| T |
20816594 |
tgc |
20816596 |
T |
|
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