View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_15 (Length: 424)
Name: NF11959_low_15
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6678955 - 6679350
Alignment:
| Q |
1 |
tcggaggaggtaccccaccggtgacattggccgaattcactattggatcagctggtaatggcggcaaggacttctacgacgtgagcttggtagacggtta |
100 |
Q |
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| T |
6678955 |
tcggaggaggtaccccaccggtgacattggccgaattcactattggatcagccggtaatggcggcaaggacttctacgacgtgagcttggtagacggtta |
6679054 |
T |
|
| Q |
101 |
caatgcaggcatgggtgtatgggctacaggaggcaccggtgattgtcaatatgcggggtgtgttgcggacttgaatggtggatgtccggcagagcttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6679055 |
caatgcaggcatgggtgtatgggctacaggaggcaccggtgattgtcaatatgcggggtgtgttgcggacttgaatggtggatgtccggcagagcttagg |
6679154 |
T |
|
| Q |
201 |
gtgaacagtggaggttcggtggtggcttgtaagagcgcgtgtttggcattcaatatggaggaattttgttgcaccggccaacatgccacgccacaaacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6679155 |
gtgaacagtggaggttcggtggtggcttgtaagagcgcgtgtttggcgttcaatatggaggaattttgttgcaccggccaacatgccacgccacaaacat |
6679254 |
T |
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| Q |
301 |
gttcgcctacacattattcagagatatttaagaaagcttgcccaactgcttacagttatgcttatgatgatgcttctagcacttgcacaggttctg |
396 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6679255 |
gttcgcctacacattattcggagatatttaagaaagcttgcccaactgcttacagttatgcttatgatgatgcttctagcacttgcacatgttctg |
6679350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 52183570 - 52183620
Alignment:
| Q |
346 |
ctgcttacagttatgcttatgatgatgcttctagcacttgcacaggttctg |
396 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
52183570 |
ctgcgtacagttatgcttatgatgatgcttcaagcacttgcacatgttctg |
52183620 |
T |
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