View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_19 (Length: 413)
Name: NF11959_low_19
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 407
Target Start/End: Complemental strand, 8270285 - 8270011
Alignment:
| Q |
133 |
ttccttttgtaaggtctatttatttgtttagcatcaagttaatttttatttttctttcaaatttcgatattgaattccaaacatggttgactcactcatc |
232 |
Q |
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| T |
8270285 |
ttccttttgtaaggtctatttatttgtttagcatcaagttaatttttatttttctttcaaatttcgatattgaattccaaacatggttgactcactcatc |
8270186 |
T |
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| Q |
233 |
caatggttaatagacatctcacatatttggcccaagaatgaatcttgtaattctttgcttcatactccacaacaagatctcaaatttgtcgtacgtaaag |
332 |
Q |
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| T |
8270185 |
caatggttaatagacatctcacatatttggcccaagaatgaatcttgtaattctttgcttcatactccacagcaagatctcaaatttgtcgtacgtaaag |
8270086 |
T |
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| Q |
333 |
ccacttgagaaaacatgaacaaacatatgtcatgatataaaggttcaagggtgaatcttgtaaagcctttgcttc |
407 |
Q |
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| T |
8270085 |
ccacttgagaaaacatgaacaaacatatgtcatgatataaaggttcaagggtgaatcttgtaaagcctttgcttc |
8270011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8270426 - 8270342
Alignment:
| Q |
1 |
ttagtccaaagtagaataactctatgtagagttgtcattaatttaatactatgtcatgttgagtatcaaccaagagactcattat |
85 |
Q |
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| T |
8270426 |
ttagtccaaagtagaataactctatgtagagttgttattaatttaatactatgtcatgttgagtatcaaccaagagactcattat |
8270342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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