View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_20 (Length: 408)
Name: NF11959_low_20
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 28813724 - 28813326
Alignment:
| Q |
1 |
atttgatttcaaagaaga----gggatgctgctaataattacaaggtttaatttctgcttctatttaaacattcttttgtagcatcttgagtagcttgaa |
96 |
Q |
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| T |
28813724 |
atttgatttcaaagaagaaagagggatactgctaataattacaaggtttaatttctgcttctatttaaacattcttttgtagcatcttgagtagcttgaa |
28813625 |
T |
|
| Q |
97 |
aatattgtattggtcttaaggnnnnnnnnnnnnnnncagtgcacaatatggttgcttttggcaagaagttgagagaatcacagattcaagaatggaaagg |
196 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813624 |
aatattgtattggtcttaaggttttttgtatttttttagtgcacaatatggttgcttttggcaagaagttgagagaatcacagattcaagaatggaaagg |
28813525 |
T |
|
| Q |
197 |
gtaacaatattcatgcttttttcttttgattcttgtaccaaactcagaaatgttttgtttaatttaggtaacacgttttaattttttacagatactacat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813524 |
gtaacaatattcatgcttttttcttttgattcttgtaccaaagtcagaaatgttttgtttaatttaggtaacacgttttaattttttacagatactacat |
28813425 |
T |
|
| Q |
297 |
taactataagtttatgaaaaagaaagtcaagagatatgcagaacaaattgaggttggagctcaaaatcaccataatgtactccgagatttttctctgct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28813424 |
taactataagtttatgaaaaagaaagtcaagagatatgtagaacaaattgaggttggagctcaaaatcaccataatgtactccgagatttttcactgct |
28813326 |
T |
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