View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_25 (Length: 391)
Name: NF11959_low_25
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 8509771 - 8509391
Alignment:
| Q |
1 |
tgaataggttatcttaaaatggtaaaattttattccattacgaaatgctctagcaaacttaacatgtatgaatacattcttttataagtttattaattat |
100 |
Q |
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| T |
8509771 |
tgaataggttatcctaaaagtgcaaaattttattgcattacgaaatgcactagcaaacttcacatgtatgtatacatacttttataagtttattaattat |
8509672 |
T |
|
| Q |
101 |
gaattttatataatttatgtcacatccctttcaattacaattcaaggtaagctagattctctttctttttccctctaagaagttaattgacttgaagaat |
200 |
Q |
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| T |
8509671 |
gcatgctatatattttatgtcacatccctttcaattacaattcaaggtaagctagattctctttctttttccctctaagaagttaattgacttgaagaat |
8509572 |
T |
|
| Q |
201 |
aatccctccaaataaacaaagcattttgagaagtggccatcatcaagttaagggaaaagtatgaaaattagccaccaaatt-ttttcatgcattagtttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8509571 |
aatccctccaaataaacaaagcattttgagaagtggccatcatcatgttaagggaaaagtatgaaaattagccaccaaatttttttcatgcattagtttt |
8509472 |
T |
|
| Q |
300 |
gcttctttcctatctcactcacttaacatgtgacctaaaatgtaagtaactgaaattggatgtgtttaaattcttcatctc |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8509471 |
gcttctttcctatctcactcacttaacatgtgacctaaaatgtaagtaactgaaattggatgtgtttaaattcttcatctc |
8509391 |
T |
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