View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_26 (Length: 383)
Name: NF11959_low_26
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 45865317 - 45864957
Alignment:
| Q |
13 |
acttataaccattgttcatgtcttatgactatctaatgtagctctcagcaatattatttatttactggttttgagcttggccttttccttgtgctgatgg |
112 |
Q |
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| T |
45865317 |
acttataaccattgttcatgtcttatgactatctaatgtagctctcagcaatattatttatttactggttttgagcttggccttttccttgtgctgatgg |
45865218 |
T |
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| Q |
113 |
agagttatgactaggcctgaaaggcataattcttttactaggacaatattaacatctattagagtatttaatttattagtcgattttcttcattactaag |
212 |
Q |
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| T |
45865217 |
agagttatgactaggcctgaaaggcataattcttttactaggacaatattaacatctattagagtatttaatttattagtcgattttcttcattactaag |
45865118 |
T |
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| Q |
213 |
ttagcaggtcgaatagttaataatatgcacatagtattaatttggggaaatatgcc-nnnnnnnttgctggtttcttcaacctatcaagatcgtgaaatt |
311 |
Q |
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| T |
45865117 |
ttagcaggtcgaatagttaataatatgcacatagtattaatttggggaaatatgccaaaaaaaattgctggtttcttcaacctatcaagatcgtgaaatt |
45865018 |
T |
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| Q |
312 |
tataccattctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
372 |
Q |
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| T |
45865017 |
tataccattctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
45864957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 4052300 - 4052210
Alignment:
| Q |
283 |
tttcttcaacctatcaaga-tcgtgaaatttataccattctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
372 |
Q |
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| T |
4052300 |
tttcttcaacctatcaaaaatcgtggaacttataccgttctactcatctttcgattttgcactaatttcattacacaatctcatgattctt |
4052210 |
T |
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