View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_low_27 (Length: 382)

Name: NF11959_low_27
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_low_27
NF11959_low_27
[»] chr8 (5 HSPs)
chr8 (10-367)||(12468682-12469038)
chr8 (151-291)||(35205395-35205534)
chr8 (222-290)||(24585609-24585677)
chr8 (201-289)||(32287510-32287598)
chr8 (223-300)||(9280557-9280634)
[»] chr7 (12 HSPs)
chr7 (193-291)||(26387635-26387733)
chr7 (217-300)||(3265330-3265413)
chr7 (179-290)||(1111903-1112012)
chr7 (198-293)||(17484807-17484902)
chr7 (198-293)||(17568312-17568407)
chr7 (201-263)||(30863587-30863649)
chr7 (222-295)||(36207422-36207496)
chr7 (226-290)||(38391999-38392063)
chr7 (197-243)||(37257613-37257659)
chr7 (217-294)||(44184002-44184079)
chr7 (199-291)||(47230585-47230678)
chr7 (234-293)||(48211398-48211460)
[»] chr6 (8 HSPs)
chr6 (193-301)||(6560233-6560341)
chr6 (196-293)||(18688940-18689034)
chr6 (177-243)||(32529334-32529400)
chr6 (217-301)||(13210276-13210360)
chr6 (222-294)||(19254979-19255051)
chr6 (193-239)||(26281079-26281125)
chr6 (232-300)||(7302671-7302739)
chr6 (212-300)||(26472673-26472761)
[»] chr5 (14 HSPs)
chr5 (179-294)||(36879987-36880102)
chr5 (193-300)||(4799625-4799732)
chr5 (191-295)||(32077882-32077986)
chr5 (212-288)||(37866909-37866985)
chr5 (196-251)||(8385114-8385169)
chr5 (196-263)||(20919573-20919640)
chr5 (217-300)||(24229393-24229476)
chr5 (182-289)||(29048581-29048687)
chr5 (196-300)||(17540921-17541025)
chr5 (196-300)||(34873492-34873596)
chr5 (235-300)||(25911166-25911231)
chr5 (179-300)||(32746293-32746414)
chr5 (222-290)||(32746351-32746419)
chr5 (222-294)||(35503535-35503607)
[»] chr1 (11 HSPs)
chr1 (222-301)||(50302566-50302645)
chr1 (151-291)||(16910032-16910172)
chr1 (217-294)||(24855156-24855233)
chr1 (201-273)||(35097229-35097301)
chr1 (222-290)||(40491131-40491199)
chr1 (217-294)||(11330927-11331004)
chr1 (217-294)||(11488948-11489025)
chr1 (235-299)||(21509318-21509382)
chr1 (151-243)||(34738715-34738806)
chr1 (229-291)||(1765554-1765616)
chr1 (222-294)||(5207586-5207658)
[»] chr3 (13 HSPs)
chr3 (194-290)||(31351416-31351510)
chr3 (182-283)||(22989197-22989298)
chr3 (201-293)||(35936685-35936777)
chr3 (197-293)||(38207295-38207391)
chr3 (224-294)||(36226886-36226956)
chr3 (189-291)||(53950224-53950326)
chr3 (217-294)||(34816667-34816744)
chr3 (255-300)||(49828276-49828321)
chr3 (159-263)||(1272030-1272134)
chr3 (193-265)||(49828182-49828254)
chr3 (253-291)||(12010780-12010818)
chr3 (255-300)||(12010897-12010942)
chr3 (222-291)||(35570575-35570644)
[»] chr4 (16 HSPs)
chr4 (199-291)||(40156632-40156724)
chr4 (217-294)||(19412124-19412201)
chr4 (222-294)||(30508774-30508846)
chr4 (193-263)||(2402926-2402996)
chr4 (179-276)||(35196698-35196796)
chr4 (217-291)||(37061953-37062027)
chr4 (222-295)||(1913931-1914004)
chr4 (201-282)||(45105587-45105667)
chr4 (256-300)||(7639376-7639420)
chr4 (224-267)||(37311038-37311081)
chr4 (223-282)||(38673086-38673145)
chr4 (193-300)||(44434019-44434126)
chr4 (217-272)||(47006102-47006157)
chr4 (193-263)||(7259781-7259851)
chr4 (217-290)||(8037889-8037962)
chr4 (212-300)||(24993308-24993396)
[»] chr2 (2 HSPs)
chr2 (222-300)||(43119735-43119813)
chr2 (194-286)||(10331995-10332087)
[»] scaffold0013 (1 HSPs)
scaffold0013 (194-282)||(25474-25562)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 12468682 - 12469038
Alignment:
Q  10 agcaaagggtaattatgtgagagtatagtatgaggatgggaaaggtaaaacacttcctcaccctctctcattgtcatgtctattgataaattccgaacat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  12468682 agcaaagggtaattatgtgagagtatagtatgaggatgggaaagataaaacacttcctcaccctgtctcattgtcatgtctattgataaattccaaacat 12468781  T
Q  110 aataaatatctttcatcatcttattnnnnnnnntaagaatctaatgatggtgggtcgacaatccaacataattttgtatataaaatcaatcaaaacattt 209  Q
    |||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  12468782 aataaatatctttcatcatcttattaaaaaaa-taagaatttaatgatggtgggtcgacaatccagcataattttgtatataaaatcaatcaaaacattc 12468880  T
Q  210 aaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaataaacacaa 309  Q
    | |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  12468881 agaattaccacttaaattaaaaacattaattgatgtatcaattttaaatgttttaattagttgtatgtgcaaaattgttttagactatcaataaactcaa 12468980  T
Q  310 aagaataactcatcttaattctcaaaaataaataaataatccctaacagtatgatgtc 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12468981 aagaataactcatcttaattctcaaaaataaataaataatccttaacagtatgatgtc 12469038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 35205395 - 35205534
Alignment:
Q  151 taatgatggtgggtcgacaatccaacataattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaa 250  Q
    |||||||||||||| |||  || || | ||||||| | ||| ||| ||||||||||||| || ||  ||| |||||||||| ||||||||||||||  ||    
T  35205395 taatgatggtgggttgacggtctaaaacaattttgcacatacaattaatcaaaacatttgaa-ttgtcacgtaaattaaaagcattaattgatatggtaa 35205493  T
Q  251 ttttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  35205494 ttttaaatgttttaatttgttgtatgtgcaaaattgttttg 35205534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 24585609 - 24585677
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    |||||||||||||||||||||| |  ||||| ||||| |||| ||||||| ||| | ||||||||||||    
T  24585609 taaattaaaaacattaattgatttagcaattctaaatgttttgattagttatatatacaaaattgtttt 24585677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 32287510 - 32287598
Alignment:
Q  201 aaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttt 289  Q
    ||||||| |||||||| ||| | |||| |||| ||||||| | ||||||||||||||| |||| |||   | |||||||||||||||||    
T  32287510 aaaacatataaaattatcacattaattgaaaatattaattaaaatgtcaattttaaatgttttgattgactatatgtgcaaaattgttt 32287598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 9280634 - 9280557
Alignment:
Q  223 aaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||||||||| |||||||||| || ||||||||||| |||  ||  ||||| |||||||| ||||||| |||| ||||    
T  9280634 aaattaaaaatattaattgatgtgacaattttaaatgtttagataggttgtgtgtgcaaagttgttttagactgtcaa 9280557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 26387635 - 26387733
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    |||||||||||||||| |||||| |||| |||| ||||||||||||||||| || ||||||||||| |||| ||| ||||| ||||||||||| |||||    
T  26387635 aatcaatcaaaacattcaaaattgccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtgcaaaattattttg 26387733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 3265330 - 3265413
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||||||||||||||||||||| || ||||| |||||||||||||| ||| | ||||||||||||||||||| ||||||    
T  3265330 ccacataaattaaaaacattaattgatgtgacaattctaaatattttaattggttatgtgtgcaaaattgttttggaatatcaa 3265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 1112012 - 1111903
Alignment:
Q  179 aattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtg 278  Q
    ||||||||| | | ||| ||| |||||||||||||||  ||  |||| |||| |||||||| |||  | ||||||||||||||||||||||||| |||||    
T  1112012 aattttgtacaaagaattaattaaaacatttaaaattgacatataaaataaatacattaatcgat--gacaattttaaatattttaattagttgcatgtg 1111915  T
Q  279 caaaattgtttt 290  Q
    |  |||||||||    
T  1111914 cggaattgtttt 1111903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 17484902 - 17484807
Alignment:
Q  198 atcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgga 293  Q
    ||||| || ||||||||| || | |||||| ||||||| ||||||| || ||||| ||||||||||||||  |||| |||| |||||| |||||||    
T  17484902 atcaagacgtttaaaattgccgcataaatttaaaacataaattgatgtgacaattataaatattttaattgattgtgtgtgtaaaattattttgga 17484807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 17568312 - 17568407
Alignment:
Q  198 atcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgga 293  Q
    ||||| || ||||||||| || | |||||| ||||||| ||||||| || ||||| ||||||||||||||  |||| |||| |||||| |||||||    
T  17568312 atcaagacgtttaaaattgccgcataaatttaaaacataaattgatgtgacaattataaatattttaattgattgtgtgtgtaaaattattttgga 17568407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 30863649 - 30863587
Alignment:
Q  201 aaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatatttt 263  Q
    |||| ||||||||||  ||| ||||||||||||||||||  ||||| ||||||||||||||||    
T  30863649 aaaatatttaaaattgtcacgtaaattaaaaacattaatcaatatgacaattttaaatatttt 30863587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 36207496 - 36207422
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaa-ttgttttggact 295  Q
    |||||||||||||||||||||| || |||||||||||||||| |||  |||||| | ||||| | ||||||||||    
T  36207496 taaattaaaaacattaattgatgtggcaattttaaatattttgatttattgtatatacaaaagtcgttttggact 36207422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 38392063 - 38391999
Alignment:
Q  226 ttaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    ||||||||||| |||||| || ||||||| | | |||||||| ||||| ||||||||||||||||    
T  38392063 ttaaaaacattcattgatgtgacaattttgagtgttttaattggttgtgtgtgcaaaattgtttt 38391999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 37257613 - 37257659
Alignment:
Q  197 aatcaaaacatttaaaattaccacttaaattaaaaacattaattgat 243  Q
    ||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  37257613 aatcaaaacatttcaaattgtcacataaattaaaaacattaattgat 37257659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 44184002 - 44184079
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| |||||||||| ||||||||||| || |||||   ||| |||| ||| ||||| ||||||||| ||||||||||    
T  44184002 ccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttgtgtgtgcaaaactgttttggac 44184079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 47230585 - 47230678
Alignment:
Q  199 tcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaata-ttttaattagttgtatgtgcaaaattgttttg 291  Q
    |||||||||||| ||||  ||| |||||||||||| |||||| || || ||||| |||||| |||| ||| ||||| |||| |||||| |||||    
T  47230585 tcaaaacatttagaattgtcacataaattaaaaactttaattaatgtgacaattctaaatatttttgattggttgtgtgtgtaaaattattttg 47230678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 48211460 - 48211398
Alignment:
Q  234 attaattgatatgtcaattttaaatattttaattag---ttgtatgtgcaaaattgttttgga 293  Q
    ||||||||||||  |||||||||||||||| ||| |   ||||||||||||||| ||||||||    
T  48211460 attaattgatataacaattttaaatattttgattggtttttgtatgtgcaaaatagttttgga 48211398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 6560233 - 6560341
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgg 292  Q
    |||||||||||| |||| ||| |||||| |||||||||| ||||||||||| || | ||| ||||||||||||||  |||| |||| |||||| |||| |    
T  6560233 aatcaatcaaaatattttaaactaccacgtaaattaaaatcattaattgatgtgacgattctaaatattttaattgattgtgtgtgtaaaattattttag 6560332  T
Q  293 actatcaat 301  Q
    |||||||||    
T  6560333 actatcaat 6560341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 18688940 - 18689034
Alignment:
Q  196 caatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgga 293  Q
    ||||||||||||| | |||| | | ||||||||||||||||||||||| || ||||||||||| |||| ||| ||||| ||   ||||||||||||||    
T  18688940 caatcaaaacattcataattgctatttaaattaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtg---aaaattgttttgga 18689034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 32529334 - 32529400
Alignment:
Q  177 ataattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgat 243  Q
    ||||||||| | ||| || |||||||||||||||||||| | || | ||||||||||||||||||||    
T  32529334 ataattttgcacatacaaccaatcaaaacatttaaaattgctacatgaattaaaaacattaattgat 32529400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 13210276 - 13210360
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaat 301  Q
    |||| ||||||||||  ||||||||||||| | |||  |||| |||| || |||||| ||||||||| ||||||||||| |||||    
T  13210276 ccacataaattaaaataattaattgatatggcgattgaaaatgttttgatcagttgtgtgtgcaaaactgttttggactgtcaat 13210360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 19254979 - 19255051
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    ||||||||||  |||||||||| || ||||| | ||| |||| ||| ||||| ||||||||||||||||||||    
T  19254979 taaattaaaacaattaattgatgtggcaattctgaatgttttgattggttgtgtgtgcaaaattgttttggac 19255051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 26281079 - 26281125
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaat 239  Q
    ||||||||||||||||| ||||| |||| ||||||| ||||||||||    
T  26281079 aatcaatcaaaacattttaaattgccacgtaaattagaaacattaat 26281125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 7302671 - 7302739
Alignment:
Q  232 acattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    ||||||||| || ||  |||| ||||| |||| ||||||||||||| |||| |||||||||||| ||||    
T  7302671 acattaattaatgtgataattctaaatgttttgattagttgtatgtccaaatttgttttggactgtcaa 7302739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 26472673 - 26472761
Alignment:
Q  212 aattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||| ||||||||||||||||| |||| || |||||  |||| |||| |||  ||||| ||| |||||||||||| ||| ||||    
T  26472673 aattcccacgtaaattaaaaacattaagtgatgtgacaattcaaaatgttttgattgattgtacgtgtaaaattgttttgaactgtcaa 26472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 36880102 - 36879987
Alignment:
Q  179 aattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtg 278  Q
    ||||||| | ||| ||||||||||||||||| |||||  ||| || |||||| |||||||||||||||   ||| ||||| |||| ||||||||| ||||    
T  36880102 aattttgcacatacaatcaatcaaaacattttaaattgtcacatacattaaatacattaattgatatgaagattctaaatgttttgattagttgtgtgtg 36880003  T
Q  279 caaaattgttttggac 294  Q
     |||||||||||||||    
T  36880002 taaaattgttttggac 36879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 4799625 - 4799732
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgg 292  Q
    ||||||||||| ||||  ||||  |||| ||||||||||| ||||| | ||||  | ||||||||| |||| |||||||||||||||||||||||||||     
T  4799625 aatcaatcaaatcattctaaatagccacataaattaaaaatattaactaatataaccattttaaatgttttgattagttgtatgtgcaaaattgttttga 4799724  T
Q  293 actatcaa 300  Q
    ||| ||||    
T  4799725 actgtcaa 4799732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 32077986 - 32077882
Alignment:
Q  191 aaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    ||||||||||||||||||   ||||| ||| ||||||||||| | |||||||| ||  |||||||||| |||| |||  |||| |||||||| |||||||    
T  32077986 aaaatcaatcaaaacattatgaattatcacataaattaaaaagagtaattgatttggtaattttaaatgttttgattgattgtgtgtgcaaatttgtttt 32077887  T
Q  291 ggact 295  Q
     ||||    
T  32077886 tgact 32077882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 37866985 - 37866909
Alignment:
Q  212 aattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtt 288  Q
    ||||| ||| ||||||||||||||||||| || || ||||| |||||||||| |||| || |||||| |||||||||    
T  37866985 aattagcacgtaaattaaaaacattaattcatgtgacaattctaaatattttgattaattatatgtgtaaaattgtt 37866909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 8385169 - 8385114
Alignment:
Q  196 caatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaat 251  Q
    |||| |||| |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  8385169 caattaaaaaatttcaaattaccacgtaaattaaaaacattaattgatatgacaat 8385114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 20919640 - 20919573
Alignment:
Q  196 caatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatatttt 263  Q
    |||||||||||||| ||||| |||| |||||||||||||||| ||||| || | ||| ||||||||||    
T  20919640 caatcaaaacattttaaattgccacgtaaattaaaaacattatttgatgtgacgattctaaatatttt 20919573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 24229476 - 24229393
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||||||||| |||||||||| ||| |||||   |||||||| ||| ||||| ||||||||| ||||||||||| ||||    
T  24229476 ccacataaattaaaatcattaattgaaatgacaattcagaatattttgattggttgtgtgtgcaaaactgttttggactgtcaa 24229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 29048581 - 29048687
Alignment:
Q  182 tttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaa 281  Q
    |||||| ||| || |||||||||||||| |||||  ||| ||| || ||||||||||||||| ||   ||| |||||||||| ||| ||||| |||||||    
T  29048581 tttgtacatacaaccaatcaaaacattttaaattgtcacataa-ttgaaaacattaattgatgtgatgattataaatattttgattggttgtgtgtgcaa 29048679  T
Q  282 aattgttt 289  Q
    ||||||||    
T  29048680 aattgttt 29048687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 17540921 - 17541025
Alignment:
Q  196 caatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggact 295  Q
    |||||||||||||| |||||  | |  ||||||||||||| ||||||| |  | ||| ||| | |||| ||||||||| ||||||||||| ||||||| |    
T  17540921 caatcaaaacattttaaattgtctcacaaattaaaaacatgaattgatgttgcgattctaagtgttttgattagttgtgtgtgcaaaattattttggatt 17541020  T
Q  296 atcaa 300  Q
    |||||    
T  17541021 atcaa 17541025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 34873596 - 34873492
Alignment:
Q  196 caatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggact 295  Q
    |||||||||||||   |||| |||| |||||| ||||||||||||||| || | ||||||||| |||| |||  |||| | |||||| |||||||| |||    
T  34873596 caatcaaaacattctgaattgccacgtaaatttaaaacattaattgatgtgacgattttaaatgtttttattgattgtgtatgcaaatttgttttgaact 34873497  T
Q  296 atcaa 300  Q
     ||||    
T  34873496 gtcaa 34873492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 25911166 - 25911231
Alignment:
Q  235 ttaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||||||| ||| |||||| |||| |||| ||| || || ||||||||||||||||||||| ||||    
T  25911166 ttaattgacatggcaatttaaaatgttttgattggtcgtgtgtgcaaaattgttttggactgtcaa 25911231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 32746414 - 32746293
Alignment:
Q  179 aattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtg 278  Q
    ||||||||| | | || ||||||||||||||| |||| |||| | |||||| |   |||||| | ||| ||| | | ||| |||| ||||||||||||||    
T  32746414 aattttgtacacacaaccaatcaaaacatttataatttccacatcaattaatatttttaatttacatgacaactctgaatgttttgattagttgtatgtg 32746315  T
Q  279 caaaattgttttggactatcaa 300  Q
    |||| |||||||| ||| ||||    
T  32746314 caaagttgttttgaactgtcaa 32746293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 32746351 - 32746419
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    ||||||||||| |||||||||| ||  |||| ||||| |||| ||| ||||| ||| ||||||||||||    
T  32746351 taaattaaaaatattaattgatgtggaaattataaatgttttgattggttgtgtgtacaaaattgtttt 32746419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 35503607 - 35503535
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    ||||||||||| |||||||||| | |  ||||||||| |||| |||  || | ||||||||||||||||||||    
T  35503607 taaattaaaaatattaattgatgtattgattttaaatgttttgattgattctgtgtgcaaaattgttttggac 35503535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 50302645 - 50302566
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaat 301  Q
    |||||||||||||||||||||| |  | ||| |||||||||| |||  ||||||||||||||||||||||||||||||||    
T  50302645 taaattaaaaacattaattgattttgcgattataaatatttttattgattgtatgtgcaaaattgttttggactatcaat 50302566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 16910172 - 16910032
Alignment:
Q  151 taatgatggtgggtcgacaatccaacataattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaa 250  Q
    |||||||||||||| |||||||||| | || ||| || |||  |  ||||||||||||| |||||||||| ||||||||||| ||||||| || || | |    
T  16910172 taatgatggtgggttgacaatccaaaacaactttatacatacgactaatcaaaacatttcaaattaccacataaattaaaaatattaatttatgtgacga 16910073  T
Q  251 ttttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    || |||||||||| |||  ||||  |||||||||| |||||    
T  16910072 ttataaatattttgattgattgtgcgtgcaaaattattttg 16910032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 24855156 - 24855233
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| ||| |||||| ||||||||||| || ||||||  |||||||| ||| ||||||||||||||||||||||||||    
T  24855156 ccacataagttaaaatcattaattgatgtgacaatttagaatattttgattggttgtatgtgcaaaattgttttggac 24855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 35097229 - 35097301
Alignment:
Q  201 aaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgt 273  Q
    ||||||||| || ||  ||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  35097229 aaaacattttaatttgacacataaattaaaaatattaattgatatgtcaattttaaatattttgattggttgt 35097301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 40491199 - 40491131
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    |||||||||||||||| ||||||||  ||||||||||||||| ||| ||||| ||||||||||| ||||    
T  40491199 taaattaaaaacattatttgatatgataattttaaatattttgattggttgtgtgtgcaaaattatttt 40491131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 11331004 - 11330927
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| |||||||||| |||||||||||||| |||||  ||||||||| |||  |||| | ||||||| ||||||||||    
T  11331004 ccacataaattaaaatcattaattgatatgacaattcaaaatattttgattgattgtgtctgcaaaactgttttggac 11330927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 11489025 - 11488948
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| |||||||||| |||||||||||||| |||||  ||||||||| |||  |||| | ||||||| ||||||||||    
T  11489025 ccacataaattaaaatcattaattgatatgacaattcaaaatattttgattgattgtgtctgcaaaactgttttggac 11488948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 21509318 - 21509382
Alignment:
Q  235 ttaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatca 299  Q
    |||||||||||| |||||| |||| |||| ||| || || |||||||||||||||| ||||||||    
T  21509318 ttaattgatatgacaatttaaaatgttttgattggtcgtttgtgcaaaattgttttagactatca 21509382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 34738806 - 34738715
Alignment:
Q  151 taatgatggtgggtcgacaatccaacataattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgat 243  Q
    ||||| |||||||| |||  ||||| | ||||||| | ||| ||||||||||| |||||| ||||  ||| ||||||||||||||||||||||    
T  34738806 taatggtggtgggttgacggtccaaaacaattttgcacatacaatcaatcaaa-catttagaattgtcacgtaaattaaaaacattaattgat 34738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 1765616 - 1765554
Alignment:
Q  229 aaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    |||| |||||||||| ||||||| |||||| |||| |||  |||| |||||||||||||||||    
T  1765616 aaaaaattaattgatgtgtcaatattaaatgttttgattgattgtgtgtgcaaaattgttttg 1765554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 5207658 - 5207586
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||||||||| ||||||||||| || |||||   ||| |||| ||| |||||||| |||||| ||||||||||    
T  5207658 taaattaaaatcattaattgatgtggcaattcagaatgttttgattggttgtatgcgcaaaactgttttggac 5207586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 290
Target Start/End: Complemental strand, 31351510 - 31351416
Alignment:
Q  194 atcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||| | |  ||||||||||| |||| ||| ||||  ||||||||||||||||    
T  31351510 atcaatcaaaacattcaaaattgccacttaaattaaaaacattacttgttgtagcaattttaaatgttttgattggttg--tgtgcaaaattgtttt 31351416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 22989298 - 22989197
Alignment:
Q  182 tttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaa 281  Q
    |||||| ||| || ||||||||||||||| ||||| ||| || ||||||||||||||||||  ||  |||||||||| |||| |||| |||| ||| |||    
T  22989298 tttgtacatataaccaatcaaaacatttagaattatcacatagattaaaaacattaattgacgtggtaattttaaatgttttgattaattgtgtgtacaa 22989199  T
Q  282 aa 283  Q
    ||    
T  22989198 aa 22989197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 35936777 - 35936685
Alignment:
Q  201 aaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgga 293  Q
    ||||||||| |||||  ||| ||||||||||| |||||||||| ||  |||| |||||||||| ||| ||||| | ||||||||| |||||||    
T  35936777 aaaacattttaaattgtcacataaattaaaaatattaattgatttggtaattctaaatattttgatttgttgtgtatgcaaaattattttgga 35936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 38207295 - 38207391
Alignment:
Q  197 aatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgga 293  Q
    |||||||| ||| | |||| |||| |||||||||||||||||||||| || ||||| ||||| |||| ||| || || |||||||| || |||||||    
T  38207295 aatcaaaatattcataattgccacataaattaaaaacattaattgatgtgacaattctaaatgtttttattggtcgtgtgtgcaaagttattttgga 38207391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 36226956 - 36226886
Alignment:
Q  224 aattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||||||| |||||||| || || ||||||  |||||||| ||| ||||| ||||||||||||||||||||    
T  36226956 aattaaaatcattaattaatgtggcaatttagaatattttgattggttgtgtgtgcaaaattgttttggac 36226886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 53950326 - 53950224
Alignment:
Q  189 ataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtt 288  Q
    |||||| | ||||||| ||||  ||||||||| ||||||||||| |||||||||| |   ||||||||||||||| ||  ||||| | |||||| |||||    
T  53950326 ataaaaccgatcaaaatattttgaattaccacgtaaattaaaaatattaattgatgtagtaattttaaatattttgatatgttgtctatgcaaagttgtt 53950227  T
Q  289 ttg 291  Q
    |||    
T  53950226 ttg 53950224  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 34816667 - 34816744
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| |||||||||| ||||||||||| || |||||   ||| |||| ||| ||||||||||||||| ||||||||||    
T  34816667 ccacataaattaaaatcattaattgatgtggcaattcagaatgttttgattggttgtatgtgcaaaactgttttggac 34816744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 49828276 - 49828321
Alignment:
Q  255 aaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||    
T  49828276 aaatgttttaattggttgtatgtgcataattgttttggactatcaa 49828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 1272030 - 1272134
Alignment:
Q  159 gtgggtcgacaatccaacataattttgtatataaaatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaat 258  Q
    |||||| |||||| ||| ||||||||| | | | || ||||||||| ||| | |||| ||   ||||||| |||||||||||||||| |||||| |||||    
T  1272030 gtgggttgacaatgcaaaataattttgcacacacaaccaatcaaaatattcagaattgccgtataaattagaaacattaattgatatttcaattctaaat 1272129  T
Q  259 atttt 263  Q
    |||||    
T  1272130 atttt 1272134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 49828182 - 49828254
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaa 265  Q
    ||||||| |||| ||||  |||| |||| ||||||||||||||||||| ||||| ||||| ||||| ||||||    
T  49828182 aatcaattaaaatattttgaattgccacgtaaattaaaaacattaattcatatgacaattctaaatgttttaa 49828254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 12010818 - 12010780
Alignment:
Q  253 ttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  12010818 ttaaatattttaattaattgtgtgtgcaaaattgttttg 12010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 12010897 - 12010942
Alignment:
Q  255 aaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||||||| |||||||||||||||||||||| |||| ||||    
T  12010897 aaatgttttaattggttgtatgtgcaaaattgttttagactgtcaa 12010942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 35570644 - 35570575
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    ||||||||||| |||||||||| || ||||||||||| |||| ||| |||||  ||| ||| ||||||||    
T  35570644 taaattaaaaatattaattgatgtggcaattttaaatgttttgattggttgtgagtgtaaatttgttttg 35570575  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 40156632 - 40156724
Alignment:
Q  199 tcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    ||||||||||||||| |  ||| ||||||||||| |||||||||| || || |||||||||||||||| |||||| | ||||||||| |||||    
T  40156632 tcaaaacatttaaaaatgtcacataaattaaaaatattaattgatgtggcagttttaaatattttaataagttgtgtatgcaaaattattttg 40156724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 19412201 - 19412124
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||| |||||||||| ||||||||||||||| |||||  ||| ||||||||  |||||||| ||||||||||||||||    
T  19412201 ccacataaattaaaatcattaattgatatgttaatttacaatgttttaattgattgtatgttcaaaattgttttggac 19412124  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 30508846 - 30508774
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggac 294  Q
    |||||||||||||||||| ||| || ||||||||||| |||| |||  |||| |||||||| |||||||||||    
T  30508846 taaattaaaaacattaatcgatgtggcaattttaaatgttttgattgattgtgtgtgcaaagttgttttggac 30508774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 2402996 - 2402926
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatatttt 263  Q
    |||||||||||||||| | ||||| ||  ||||||||||| ||| |||||| || ||||||||||||||||    
T  2402996 aatcaatcaaaacattgagaattatcatataaattaaaaatatttattgatgtgacaattttaaatatttt 2402926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 35196698 - 35196796
Alignment:
Q  179 aattttgtatataaaatcaatcaaaacatttaaaattaccacttaaa-ttaaaaacattaattgatatgtcaattttaaatattttaattagttgtatg 276  Q
    ||||||||| ||  || ||||||||| ||| | |||||| || |||| |||||||||||||||||| |||||||| ||||| |||| ||| ||||||||    
T  35196698 aattttgtacatgcaagcaatcaaaaaattcagaattactacataaaattaaaaacattaattgatgtgtcaattctaaatgttttgattggttgtatg 35196796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 37062027 - 37061953
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttg 291  Q
    |||| |||||||||| ||||||||||| || ||||| ||||| |||| ||| ||||| ||||||||| |||||||    
T  37062027 ccacataaattaaaatcattaattgatgtgacaattctaaatgttttgattggttgtgtgtgcaaaactgttttg 37061953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 1914004 - 1913931
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggact 295  Q
    |||||||||||||| ||||||| || ||||| |||||||||| |||  |||| |||| |||||| |||||||||    
T  1914004 taaattaaaaacataaattgatgtgacaattataaatattttgattgattgtgtgtgtaaaattattttggact 1913931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 45105587 - 45105667
Alignment:
Q  201 aaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaa 282  Q
    |||| |||| |||||||||| ||||||||||  |||||||||  || ||||| |||||||||| ||| ||||||||||||||    
T  45105587 aaaatattttaaattaccacataaattaaaat-attaattgacttgacaattataaatattttgatttgttgtatgtgcaaa 45105667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 7639376 - 7639420
Alignment:
Q  256 aatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||    
T  7639376 aataatttaattggttgtatgtgcaaaattgttttggactgtcaa 7639420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 37311038 - 37311081
Alignment:
Q  224 aattaaaaacattaattgatatgtcaattttaaatattttaatt 267  Q
    |||||||||||||||||||||||  |||||||||| ||||||||    
T  37311038 aattaaaaacattaattgatatgataattttaaatgttttaatt 37311081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 38673145 - 38673086
Alignment:
Q  223 aaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaa 282  Q
    |||||| |||||||||||||| || ||||||||||| |||| |||||| || ||||||||    
T  38673145 aaattataaacattaattgatgtgacaattttaaatgttttgattagtagtgtgtgcaaa 38673086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 44434019 - 44434126
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttgg 292  Q
    |||||||||||||||| | ||||  ||| ||||||||||| ||| ||| || || ||| | ||||| |||| |||  |||| ||||| |||||||||||     
T  44434019 aatcaatcaaaacattaagaattgacacataaattaaaaatatttattaatgtgacaactctaaatgttttgattgattgtgtgtgcgaaattgttttga 44434118  T
Q  293 actatcaa 300  Q
    ||||||||    
T  44434119 actatcaa 44434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 47006157 - 47006102
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttg 272  Q
    |||| |||||||||||||||| |||||||| ||||| |||||||||| ||| ||||    
T  47006157 ccacataaattaaaaacattagttgatatgacaattctaaatattttgattggttg 47006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 7259851 - 7259781
Alignment:
Q  193 aatcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatatttt 263  Q
    |||||||||||| ||||  ||||  ||| ||||||||||| ||||||||||||| ||||| ||||| ||||    
T  7259851 aatcaatcaaaatattttgaattgacacgtaaattaaaaatattaattgatatgacaattctaaatgtttt 7259781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 8037889 - 8037962
Alignment:
Q  217 ccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgtttt 290  Q
    |||| ||||||||||| |||||||||| || | ||| |||||||||| ||| || || |||||||| |||||||    
T  8037889 ccacgtaaattaaaaatattaattgatgtggcgattctaaatattttgattggtcgtgtgtgcaaagttgtttt 8037962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 24993308 - 24993396
Alignment:
Q  212 aattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||| |||| ||||||||||||||||| |||| || ||||| ||||| |||| |||| || || |||||||| | ||||| ||| ||||    
T  24993308 aattgccacgtaaattaaaaacattaaatgatgtgacaattctaaatgtttttattaattataggtgcaaaactattttgaactgtcaa 24993396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 43119813 - 43119735
Alignment:
Q  222 taaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattgttttggactatcaa 300  Q
    |||||||||||||||| || ||||    |||||||||||||||||| ||||||| |||||||||||||| ||| |||||    
T  43119813 taaattaaaaacattagttaatataatgattttaaatattttaattggttgtatatgcaaaattgttttagaccatcaa 43119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 10331995 - 10332087
Alignment:
Q  194 atcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaaattg 286  Q
    |||||| ||||||||  ||||| |||| ||||||||||||||  ||||||| |   ||| |||||||||  |||| |||||||||||||||||    
T  10331995 atcaattaaaacattctaaattgccacataaattaaaaacatgcattgatacggtgattataaatatttagattatttgtatgtgcaaaattg 10332087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 25474 - 25562
Alignment:
Q  194 atcaatcaaaacatttaaaattaccacttaaattaaaaacattaattgatatgtcaattttaaatattttaattagttgtatgtgcaaa 282  Q
    |||||| ||||||||  ||||| |||| ||||||||||||||  |||||| ||   ||| ||||||||| ||||| |||||||||||||    
T  25474 atcaattaaaacattctaaattgccacataaattaaaaacatgcattgatgtggtgattataaatatttaaattatttgtatgtgcaaa 25562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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