View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_30 (Length: 379)
Name: NF11959_low_30
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 16007946 - 16007598
Alignment:
| Q |
18 |
aagagcatttttcatatagattttattgccatgagaaaaagcacatgatccaagtataaagaacattctatgaattcctcatcttaaagaacatatcttt |
117 |
Q |
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| T |
16007946 |
aagagcatttttcatatagattttattgccatgagaaaaa-cacatgatccaagtataaagaacattctatgaattcctcatcttaaagaacatatcttt |
16007848 |
T |
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| Q |
118 |
tgcaattcatatcggtaactggttccatgttttgagcttgttgttttgttggcgaaaatcgaacttactaaacgatctttatatgtagacaccactgag- |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
16007847 |
tgcaattcatatcggtaactggttccatgttttgagcttgttgttttgttggcgaaaatcgtacttactaaatgatctttatatgtagacaccactgaga |
16007748 |
T |
|
| Q |
217 |
aaattacataacacagtaatttttgtagttcagcggctcttgtttatgtttaccaaaatacttcgataaatgtatcaactgtcgcaaatattaaaggttt |
316 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16007747 |
aaattacataacacagaaatttttgtagttcagcagctcttgtttatgtttaccaaaatacttcgataaatgtatcaactgtcgcaaatattaaaggttt |
16007648 |
T |
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| Q |
317 |
gattggaataaaaatgatttcctgatatgaccagaagcttggattcatct |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16007647 |
gattggaataaaaatgatttcctgatatgaccagaagcttggattcatct |
16007598 |
T |
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