View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_33 (Length: 359)
Name: NF11959_low_33
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 33274569 - 33274910
Alignment:
| Q |
1 |
ataatggaaggctagctattacttaatttttcatgttgtaatttgcaagctatgagactttatatatatgtgtgtgaaaaagttgttaagcttttcagca |
100 |
Q |
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| T |
33274569 |
ataatggaaggctagctattacttaatttttcatgttgtaatttgcaagctatgagactttatatatatgtgtgtgaaaaagttgttaagcttttcagca |
33274668 |
T |
|
| Q |
101 |
agcaaattggattaatatattacatgcacattgtcttgggattataagtataattttttggtatgataatgacaaggtacctttgaaattcaattggtga |
200 |
Q |
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| T |
33274669 |
agcaaattggattaatatattacatgcacattgtcttgggattataagtataattttttggtatgataatgacaaggtacctttgaaattcaattggtga |
33274768 |
T |
|
| Q |
201 |
tgcccttaatttttcaacagaatgaccactcctatagctgtcgtttgggagcagacaagcttggaatttggttgtatgtgccaaaaacaaaatcaactag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33274769 |
tgcccttaatttttcaacagaatgaccactcctatagctgtcgtttgggagcagacaagcttggaatttggttgtatgtgccaaaaacaaaatcaactag |
33274868 |
T |
|
| Q |
301 |
tgtatttttaatctttttatttcttctaaaaagcatattatt |
342 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
33274869 |
tttatttttaatctttttatttcttctcaaaagcatattatt |
33274910 |
T |
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