View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_34 (Length: 354)
Name: NF11959_low_34
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 8510418 - 8510077
Alignment:
| Q |
18 |
ggtattgcaattgctaaattgtatatataggtctatat--gtatatggattgatgtccaagtagagaatttccttggcaatgtcatttgtatcttgagta |
115 |
Q |
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| T |
8510418 |
ggtattgcaattgctaaattgtatatataggtctatatatgtatatggattgatgtccaagtagagaatttccttggcaatgtcatttgtatcttgagta |
8510319 |
T |
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| Q |
116 |
atgatttattaaatgaagcaatgttctacattggatgagggcattttgcctctttca------tgaaaccctctttgatttaacttgcttttgcttgttt |
209 |
Q |
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| T |
8510318 |
atgatttattaaatgaagcaatgttctacattggatgagggcattttgcctcttttaattatttgaaaccctctttgatttaacttgcttttgcttgttt |
8510219 |
T |
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| Q |
210 |
gagaaatgaaatattgaaaggttaatgcttaattccaaataaattgttttaggcattaatcaaatttaaacattttgacagcaagatataagctccaaaa |
309 |
Q |
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| T |
8510218 |
gagaaatgaaatattgaaagggtaatgcttaattccaaataaattgttttaggcattaatcaaatttaaacattttgacagcaagatataagctccaaaa |
8510119 |
T |
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| Q |
310 |
cacatagattaaacccatatctaatgatggggtttggtcaaa |
351 |
Q |
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| T |
8510118 |
cacatagattaaacccatatctaatgatggggtttggtcaaa |
8510077 |
T |
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