View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_36 (Length: 342)
Name: NF11959_low_36
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 2703964 - 2703645
Alignment:
| Q |
10 |
gcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
109 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2703964 |
gcaaaggagagacctaccatggccacatttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
2703865 |
T |
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| Q |
110 |
ttgagcatagagaagacttagctcaacaaaattacgactcaaaaaacagtgtaactgtcacaagcttgcaaggcagatagaatacatatgatgtt-aatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
2703864 |
ttgagcatagagaagacttagctcaacaaaattacgactcgaaaaacagtgtaactgtcacaagcttgcaaggtagatagaatacatatgatgttaaatg |
2703765 |
T |
|
| Q |
209 |
tgtatcaatgtacctggtaaaaatttcaaatagtatgaatgaaactcatgatctgtgggatgatgaaactcttctactcgactctgtgtctcgttctact |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2703764 |
tgtatcaatgtacctggtaaaaatttcaaatagtatgaatgaaactcatgatctgtgggatgatgaaactcttttactcgactctgtgtctcgttctact |
2703665 |
T |
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| Q |
309 |
cagaattgttagttatattt |
328 |
Q |
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||||||| |||||||||||| |
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| T |
2703664 |
cagaatttttagttatattt |
2703645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 2716579 - 2716387
Alignment:
| Q |
10 |
gcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |
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| T |
2716579 |
gcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaacctgcattccttctaagtcaga |
2716480 |
T |
|
| Q |
110 |
ttgagcatagagaagacttagctcaacaaaattacgactcaaaaaacagtgtaactgtcacaagcttgcaaggcagatagaatacatatgatg |
202 |
Q |
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| T |
2716479 |
ctgagcatagagcagactcaggtcaacaaaataacgactcgaataacagtgtcactgtcacaagcttgcaaggcagatagaatacatatgatg |
2716387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 2723202 - 2723010
Alignment:
| Q |
10 |
gcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |
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| T |
2723202 |
gcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaacctgcattccttctaagtcaga |
2723103 |
T |
|
| Q |
110 |
ttgagcatagagaagacttagctcaacaaaattacgactcaaaaaacagtgtaactgtcacaagcttgcaaggcagatagaatacatatgatg |
202 |
Q |
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||||||||||| ||||| || |||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2723102 |
ctgagcatagagcagactcaggtcaacaaaataacgactcgaataacagtgtcactgtcacaagcttgcaaggcagatagaatacatatgatg |
2723010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 2745033 - 2744844
Alignment:
| Q |
10 |
gcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |
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| T |
2745033 |
gcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctcaacctgcattccttctaagtcaga |
2744934 |
T |
|
| Q |
110 |
ttgagcatagagaagacttagctcaacaaaattacgactcaaaaaacagtgtaactgtcacaagcttgcaaggcagatagaatacatatgatg |
202 |
Q |
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||||||||||| ||||| || |||||||||| ||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
2744933 |
ctgagcatagagcagactcaggtcaacaaaataacgactcgaataacagtgtcactgtcacaagcttgcaaggc---tagaatacatatgatg |
2744844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 2711623 - 2711512
Alignment:
| Q |
10 |
gcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcattcaaagcaaga |
109 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||| |
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| T |
2711623 |
gcaaaggagagacctactatggccgcagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaaccggcattccttctaagtcaga |
2711524 |
T |
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| Q |
110 |
ttgagcatagag |
121 |
Q |
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||||||||||| |
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| T |
2711523 |
ctgagcatagag |
2711512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 20062072 - 20061996
Alignment:
| Q |
22 |
cctaatatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatctcaacctgcattcat |
98 |
Q |
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||||||||||| ||||| |||| |||||||| |||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
20062072 |
cctaatatggctacagtaatttctatgcttaacagtgaggttgcatcacttcctcctccaagtcaacctgcattcat |
20061996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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