View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_37 (Length: 330)
Name: NF11959_low_37
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 12701516 - 12701810
Alignment:
| Q |
19 |
gaaattcaatcggggacacaggtgattggtatccaattcattcatatgaggaaaaacaggcttgatgataatcgtagtggtagaagtatacaacatgagc |
118 |
Q |
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| T |
12701516 |
gaaattcaatcggggacacaagtgattggtatccaattcattcatatgaggaaaaacaggcttgatgataatcgttgtggtagtagtatacaacatgagc |
12701615 |
T |
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| Q |
119 |
acaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacacatttataacaagtccaacttgttgttcgggtgac |
218 |
Q |
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| T |
12701616 |
acaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacgcatttataacaagtccaacttgttgttcgggtgac |
12701715 |
T |
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| Q |
219 |
atcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattttgttgctttccttgatgcgtttca |
314 |
Q |
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| T |
12701716 |
atcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaa-tttgttgctttccttgatgcgtttca |
12701810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 12762516 - 12762810
Alignment:
| Q |
19 |
gaaattcaatcggggacacaggtgattggtatccaattcattcatatgaggaaaaacaggcttgatgataatcgtagtggtagaagtatacaacatgagc |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
12762516 |
gaaattcaatcggggacacaagtgattggtatccaattcattcatatgaggaaaaacaggcttgatgataatcgttgtggtagtagtatacaacatgagc |
12762615 |
T |
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| Q |
119 |
acaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacacatttataacaagtccaacttgttgttcgggtgac |
218 |
Q |
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| T |
12762616 |
acaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacgcatttataacaagtccaacttgttgttcgggtgac |
12762715 |
T |
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| Q |
219 |
atcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattttgttgctttccttgatgcgtttca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12762716 |
atcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaa-tttgttgctttccttgatgcgtttca |
12762810 |
T |
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