View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_4 (Length: 708)
Name: NF11959_low_4
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 18 - 698
Target Start/End: Complemental strand, 9238670 - 9237989
Alignment:
| Q |
18 |
gttaaagttgtcatttttt-agctttctttgataagtactggtgtctttcattgcatgacactttttcatcactcaagtcaataaccgtcaccgataact |
116 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238670 |
gttaaagttatcatttttttagctttctttgataagtactggagtctttcattgcatgacactttttcatcactcaagtcaataaccgtcaccgataact |
9238571 |
T |
|
| Q |
117 |
tagtttcactcccactcaccgcgttgccggcggtgagggctaacgtcaatgtcatcaatcactaaaaccatcgccggcggttgtttccaccaacagatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9238570 |
tagtttcactcccactcaccgcgttgccggcggtgagggctaacgtcaatgtcatcaatcactaaaaccatcgccggcggttgtttccaccaacagagca |
9238471 |
T |
|
| Q |
217 |
tcaatggtgccaccgccgaccatcacagcaaccattccccggagctcaaatttaacgacaccaaaacgacgtcgtcacagttgcaattctttgttcgcat |
316 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9238470 |
tcaatggtgccaccgccgaccacctcagcaaccattccccggagctcaaattcaatgacaccaaaacgacgtcgtcagagttgcaattctttgttcgcat |
9238371 |
T |
|
| Q |
317 |
gatgtggaaatctaacaccatagtcattcacgcttcaagagaagacacagtggaatctatcctccaacaaatttcatccaaaaccaaaattcctattgaa |
416 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9238370 |
gatgtggaaatgtaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaa |
9238271 |
T |
|
| Q |
417 |
tatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238270 |
tatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaat |
9238171 |
T |
|
| Q |
517 |
tgaggagtatagggcgttctgtagtgtggaattctgcagatgatattatttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccat |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238170 |
tgaggagtatagggcgttctgtagtgtggaattctgcagatgatattgtttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccat |
9238071 |
T |
|
| Q |
617 |
gattattcataatcactttgcaaagtatatgaataattttgaatannnnnnnnnnnncaagttaatgaaaattccttctctg |
698 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9238070 |
gattattcataatcactttgcaaagtatatgaataattttgaatatttttattttttcaagttaatgaaaattccttctctg |
9237989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 117 - 654
Target Start/End: Complemental strand, 9251073 - 9250551
Alignment:
| Q |
117 |
tagtttcactcccactcaccgcgttgccggcggtgagggctaacgtcaatgtcatcaatcactaaaaccatcgccggcggttgtttccaccaacagatca |
216 |
Q |
| |
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||||||| ||| |||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||| || ||||||||||||| | |
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| T |
9251073 |
tagtttccctctcactcaccacgttgacggcggtgagcgctaacgtcaatgtcatcgatcattaaaaccctcatcggcggttgtttcta----------- |
9250985 |
T |
|
| Q |
217 |
tcaatggtgccaccgccgaccatcacagcaaccattccccggagctcaaatttaacgacaccaaaacgacgtcgtcacagttgcaattctttgttcgcat |
316 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9250984 |
----tggcaccaccgccgaccaccacagcaaccattccccggagctcaaattcaatgacaccaaaacgacgtcgtcagagttgcaattctttgttcgcat |
9250889 |
T |
|
| Q |
317 |
gatgtggaaatctaacaccatagtcattcacgcttcaagagaagacacagtggaatctatcctccaacaaatttcatccaaaaccaaaattcctattgaa |
416 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9250888 |
gatgtggaaatgtaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaa |
9250789 |
T |
|
| Q |
417 |
tatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9250788 |
tatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaat |
9250689 |
T |
|
| Q |
517 |
tgaggagtatagggcgttctgtagtgtggaattctgcagatgatattatttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccat |
616 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||| ||||| |
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| T |
9250688 |
tgaggagtatagtgcgttctgtagtgtggaattctacagatgatattgtttcaatgattctcaaactctgtagaggtgaaccagtgattggtgcttccat |
9250589 |
T |
|
| Q |
617 |
gattattcataatcactttgcaaagtatatgaataatt |
654 |
Q |
| |
|
| | || ||| |||||| ||||||||||| |||||| |
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| T |
9250588 |
aaatttttgtaaacactttacaaagtatatgcataatt |
9250551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 300 - 528
Target Start/End: Complemental strand, 9258979 - 9258751
Alignment:
| Q |
300 |
caattctttgttcgcatgatgtggaaatctaacaccatagtcattcacgcttcaagagaagacacagtggaatctatcctccaacaaatttcatccaaaa |
399 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||||| |||| |||| ||||| |||||| | ||||| ||||| | ||| |||||||||| || |||| |
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| T |
9258979 |
caattcttcgtccgcatgatgtggaactgtaacaccttagtgattcgtgcttctagagaaaaaacagttgaatcgcttctcgaacaaatttcgtctaaaa |
9258880 |
T |
|
| Q |
400 |
ccaaaattcctattgaatatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatct |
499 |
Q |
| |
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||| |||||| ||| || |||||||||| || ||| | |||||||||||| | | ||||||||||| || ||||||||||||||||||| || ||||| |
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| T |
9258879 |
ccagaattccgattcaacatcaacgattaatttacgaaggaaaacagcttactctagaacagagtctctgcgaatgcggcatcgaaaacgatgcaaatct |
9258780 |
T |
|
| Q |
500 |
tcaattggttggtcaattgaggagtatag |
528 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
9258779 |
tcaattggttggtcgcttgaggagtatag |
9258751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 382 - 528
Target Start/End: Complemental strand, 9268893 - 9268747
Alignment:
| Q |
382 |
aacaaatttcatccaaaaccaaaattcctattgaatatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcat |
481 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||||| || ||| | | |||||||||||||| | || ||||||| || |||| ||||| |
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| T |
9268893 |
aacaaatttcattcaaaaccaaaattccgattgaacatcaacgattaatatacgaagcaaaacagcttcagctagaatagagtcttcgcgaatgtggcat |
9268794 |
T |
|
| Q |
482 |
cgaaaacgacgccaatcttcaattggttggtcaattgaggagtatag |
528 |
Q |
| |
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||||||||| || ||||| ||||||||||| | |||||||||||||| |
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| T |
9268793 |
cgaaaacgatgcaaatctccaattggttggacgattgaggagtatag |
9268747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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