View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_45 (Length: 271)
Name: NF11959_low_45
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 49008186 - 49008438
Alignment:
| Q |
1 |
agttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccaga |
100 |
Q |
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| T |
49008186 |
agttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccaga |
49008285 |
T |
|
| Q |
101 |
acaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008286 |
acaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttg |
49008385 |
T |
|
| Q |
201 |
gagcccagcagccattagatcggctatgatgacaacatcagacatgttagaca |
253 |
Q |
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| T |
49008386 |
gagcccagcagccattagatcggctatgatgacaacatcagacatgttagaca |
49008438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 21687100 - 21686954
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagccc |
206 |
Q |
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|||| ||||||||||| ||| || ||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| | |||||||||| |
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| T |
21687100 |
tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatggttggagccc |
21687001 |
T |
|
| Q |
207 |
agcagccattagatcggctatgatgacaacatcagacatgttagaca |
253 |
Q |
| |
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| T |
21687000 |
gtcatctattaggtcggcaattatgacaacatcagacatattagaca |
21686954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 8963150 - 8963285
Alignment:
| Q |
110 |
tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagc |
209 |
Q |
| |
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||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||| | || || ||||||||| | |
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| T |
8963150 |
tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttttgaaaggagcacatgctgattggagcccgac |
8963249 |
T |
|
| Q |
210 |
agccattagatcggctatgatgacaacatcagacat |
245 |
Q |
| |
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| T |
8963250 |
agctattaggtcggcaatgatgacaacatcagacat |
8963285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 8974543 - 8974681
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
204 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
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| T |
8974543 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
8974640 |
T |
|
| Q |
205 |
ccagcagccattagatcggctatgatgacaacatcagacat |
245 |
Q |
| |
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|| ||||| ||||| || || |||||||||||||||||||| |
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| T |
8974641 |
cctgcagctattaggtcagcaatgatgacaacatcagacat |
8974681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 8945937 - 8945860
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
184 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||| | ||||||||| || ||||| ||||||| |||||||||||||| |
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| T |
8945937 |
tcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaag |
8945860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 8958133 - 8958210
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
184 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| ||| ||||||| || ||||||||||| || |||||||| |||| |
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| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttttgaaag |
8958210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 19375811 - 19375734
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
184 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||| |||||| |||| |
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| T |
19375811 |
tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaag |
19375734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 34962715 - 34962579
Alignment:
| Q |
109 |
ttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccag |
208 |
Q |
| |
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|||| ||| ||||| ||| ||||||||||||| ||| | || || || ||||||||||| || || ||||| |||| | |||| | ||||||||||| |
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| T |
34962715 |
ttcagcaaattcaatttgataagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccag |
34962616 |
T |
|
| Q |
209 |
cagccattagatcggctatgatgacaacatcagacat |
245 |
Q |
| |
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|||| ||| | ||||| || ||||||||||||||||| |
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| T |
34962615 |
cagcaattcggtcggcaataatgacaacatcagacat |
34962579 |
T |
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