View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_low_48 (Length: 264)

Name: NF11959_low_48
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_low_48
NF11959_low_48
[»] chr5 (2 HSPs)
chr5 (33-164)||(29293999-29294130)
chr5 (197-263)||(29293903-29293971)
[»] chr3 (2 HSPs)
chr3 (30-150)||(27003230-27003350)
chr3 (198-257)||(27003124-27003185)
[»] chr7 (2 HSPs)
chr7 (67-150)||(33627613-33627696)
chr7 (198-257)||(33627742-33627803)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 29294130 - 29293999
Alignment:
Q  33 ggaccaactactaggcaaaggaattaaatttaagaattaaccaacacgccacttgtagatttgtgtttaattctactttctattttttatattcaacaca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29294130 ggaccaactactaggcaaaggaattaaatttaagaattaaccaacacgccacttgtagatttgtgtttaattctactttctattttttatattcaataca 29294031  T
Q  133 ttcaggttcaaaagccatgatatattccacca 164  Q
    ||||||||||||||||||| ||||||||||||    
T  29294030 ttcaggttcaaaagccatggtatattccacca 29293999  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 29293971 - 29293903
Alignment:
Q  197 aaaatctggtacacgtttttattttaaaagaattgaagctggtggtaca--cttcatgtatgtatgttt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  29293971 aaaatctggtacacgtttttattttaaaagaattgaagctggtggtacactcttcatgtatgtatgttt 29293903  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 27003350 - 27003230
Alignment:
Q  30 acaggaccaactactaggcaaaggaattaaatttaagaattaaccaacacgccacttgtagatttgtgtttaattctactttctattttttatattcaac 129  Q
    |||||| |||| || |||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27003350 acaggatcaacaacaaggcaaaggaattagatttaagaattagccaactcaccacttgtagatttgtgtttaattctactttctattttttatattcaac 27003251  T
Q  130 acattcaggttcaaaagccat 150  Q
    |||||||||||||||||||||    
T  27003250 acattcaggttcaaaagccat 27003230  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 27003185 - 27003124
Alignment:
Q  198 aaatctggtacacgtttttattttaaaagaattgaagctggtggtaca--cttcatgtatgt 257  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  27003185 aaatctggtacacgtttttattttgaaagaattgaagctggtggtacactcttcatgtatgt 27003124  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 33627613 - 33627696
Alignment:
Q  67 aattaaccaacacgccacttgtagatttgtgtttaattctactttctattttttatattcaacacattcaggttcaaaagccat 150  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33627613 aattaaccaacacaccacttgtagatttgtgtttaattctactttctattttttatattcaacacattcaggttcaaaagccat 33627696  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 33627742 - 33627803
Alignment:
Q  198 aaatctggtacacgtttttattttaaaagaattgaagctggtggtaca--cttcatgtatgt 257  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  33627742 aaatctggtacacgtttttattttgaaagaattgaagctggtggtacactcttcatgtatgt 33627803  T

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