View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_49 (Length: 263)
Name: NF11959_low_49
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 12763043 - 12762805
Alignment:
| Q |
25 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatattcgtttgttgcttaaaagactttacttcaaagt |
124 |
Q |
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| T |
12763043 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatatttgtttgttgcttaaaagactttacttcaaagt |
12762944 |
T |
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| Q |
125 |
taggattagctaaaatactagaaattgtagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgagaaccattttaaaaa |
224 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12762943 |
taggattagctaaaatactagaaattgaagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgagaaacattttaaaaa |
12762844 |
T |
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| Q |
225 |
attacacacgtctgtctgaaactgctcatgaattgaaac |
263 |
Q |
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| T |
12762843 |
attacacacgtctgtctgaaactgctcatgaattgaaac |
12762805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 12702043 - 12701805
Alignment:
| Q |
25 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatattcgtttgttgcttaaaagactttacttcaaagt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12702043 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatatttgtttgttgcttaaaagactttacttcaaagt |
12701944 |
T |
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| Q |
125 |
taggattagctaaaatactagaaattgtagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgagaaccattttaaaaa |
224 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
12701943 |
taggattagctaaaatactagaaattgaagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgataaacattttaaaaa |
12701844 |
T |
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| Q |
225 |
attacacacgtctgtctgaaactgctcatgaattgaaac |
263 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
12701843 |
attacacatgtctgtctgaaactgctcatgaattgaaac |
12701805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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