View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_low_5 (Length: 686)

Name: NF11959_low_5
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_low_5
NF11959_low_5
[»] chr4 (13 HSPs)
chr4 (122-674)||(36440943-36441496)
chr4 (1-95)||(36440856-36440950)
chr4 (278-427)||(16061464-16061623)
chr4 (278-354)||(6131961-6132038)
chr4 (278-354)||(6087060-6087137)
chr4 (295-427)||(38138689-38138829)
chr4 (278-352)||(6166387-6166462)
chr4 (278-347)||(18886184-18886254)
chr4 (189-235)||(16061381-16061427)
chr4 (493-527)||(54779456-54779490)
chr4 (278-354)||(32727986-32728063)
chr4 (495-527)||(16061673-16061705)
chr4 (475-527)||(42522799-42522850)
[»] chr7 (10 HSPs)
chr7 (278-427)||(44767334-44767491)
chr7 (278-427)||(27224296-27224451)
chr7 (278-527)||(33540107-33540366)
chr7 (282-527)||(38190283-38190537)
chr7 (279-527)||(22317695-22317950)
chr7 (278-526)||(19468337-19468591)
chr7 (278-357)||(40230894-40230974)
chr7 (278-354)||(39608148-39608225)
chr7 (475-526)||(27224501-27224552)
chr7 (184-234)||(39608265-39608315)
[»] chr2 (9 HSPs)
chr2 (278-540)||(2103902-2104171)
chr2 (282-527)||(30706875-30707119)
chr2 (278-427)||(44259836-44259993)
chr2 (278-354)||(26290428-26290505)
chr2 (278-354)||(5868993-5869070)
chr2 (278-354)||(18242158-18242235)
chr2 (184-240)||(2104201-2104257)
chr2 (475-523)||(7162696-7162744)
chr2 (185-233)||(18242070-18242118)
[»] chr8 (11 HSPs)
chr8 (295-527)||(6976593-6976827)
chr8 (295-527)||(24534725-24534965)
chr8 (278-529)||(9946541-9946801)
chr8 (328-427)||(33474536-33474642)
chr8 (181-240)||(21466803-21466862)
chr8 (278-354)||(13751454-13751531)
chr8 (276-524)||(44004328-44004591)
chr8 (386-427)||(21467022-21467063)
chr8 (496-524)||(21467115-21467143)
chr8 (480-524)||(33474426-33474470)
chr8 (184-236)||(45231680-45231732)
[»] chr1 (13 HSPs)
chr1 (278-527)||(5882540-5882797)
chr1 (282-354)||(50509796-50509869)
chr1 (278-419)||(24892022-24892172)
chr1 (278-352)||(9672504-9672579)
chr1 (392-527)||(9672255-9672390)
chr1 (475-525)||(23688635-23688685)
chr1 (278-354)||(7380386-7380463)
chr1 (278-354)||(23688394-23688471)
chr1 (278-354)||(26687705-26687782)
chr1 (484-527)||(24892233-24892276)
chr1 (183-235)||(24891928-24891980)
chr1 (371-423)||(27564957-27565009)
chr1 (278-353)||(29864682-29864758)
[»] chr6 (15 HSPs)
chr6 (296-527)||(26497884-26498124)
chr6 (278-427)||(7201035-7201192)
chr6 (479-540)||(609838-609900)
chr6 (365-427)||(3361856-3361918)
chr6 (189-240)||(10670083-10670134)
chr6 (278-427)||(10669894-10670051)
chr6 (278-354)||(1112507-1112584)
chr6 (296-427)||(28847797-28847937)
chr6 (365-427)||(609725-609788)
chr6 (184-240)||(609542-609598)
chr6 (365-427)||(33986452-33986514)
chr6 (183-232)||(26497775-26497824)
chr6 (278-353)||(17364249-17364324)
chr6 (495-527)||(28847988-28848020)
chr6 (370-426)||(29288532-29288588)
[»] chr5 (6 HSPs)
chr5 (371-527)||(6967411-6967568)
chr5 (278-427)||(11245313-11245471)
chr5 (278-525)||(22867865-22868123)
chr5 (282-354)||(27246227-27246300)
chr5 (476-525)||(9364111-9364160)
chr5 (491-523)||(33046396-33046428)
[»] chr3 (3 HSPs)
chr3 (370-427)||(42624685-42624742)
chr3 (278-354)||(54561111-54561188)
chr3 (278-353)||(42624767-42624843)
[»] scaffold0125 (1 HSPs)
scaffold0125 (317-357)||(5825-5865)
[»] scaffold0005 (1 HSPs)
scaffold0005 (296-351)||(284300-284356)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 122 - 674
Target Start/End: Original strand, 36440943 - 36441496
Alignment:
Q  122 tgagagaacaatagaagagttgtctataaaaccaagcaaatagattgagaattgaatggattcaggaccgtccttatgaaactggaggctcggctatcat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| || |    
T  36440943 tgagagaacaatagaagagttgtctataaaaccaagcaaatagattgagaactgaatagattcaggactgtccttatgaaactggaggctcggctctctt 36441042  T
Q  222 agtaaaaataggcccttaacagaagnnnnnnnncgtacaaannnnnnnaaagattaaatcttctatttcaacagaaaataacactcgtataattatatta 321  Q
    ||||||||||||||||||| |||||        |||||||        |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  36441043 agtaaaaataggcccttaatagaagaaaaaaaacgtacaattttttttaaagattaaatcttctatttaaactgaaaataacactcgtataattatatta 36441142  T
Q  322 gtcaccgaaatcaaaattagcaattatttttacaaatacatgtacttggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaaca 421  Q
    | ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  36441143 gccactgaaatcaaaattagcaattatttttacaaagacatgtacttgaaaatagaaacatagaacatgattttt-acttggaaattgaaacatgaaaca 36441241  T
Q  422 tgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgc 521  Q
    ||||||            |||| |||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||    
T  36441242 tgtttatttttcttttttgagtgggggtgtggatattgaacaataatttttttcttgaggcccatcactttgggagacccagctcggttgagctctttgc 36441341  T
Q  522 actccc-aaggaacagcccttaatggatttgaggacacgcaactgtgtagcagtaaataaataaatagttagttgtgtctgtatccaattcaccgtttat 620  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36441342 actccccaaggaacagcccttaatgaatttgaggacacgcaactgcgtagcagtaaataaataaatagttagttgtgtctgtagccaattcaccgtttat 36441441  T
Q  621 ttatttgctttttattggttaaaca-ttttttaaccaatcaccgttattccttct 674  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36441442 ttatttgctttttattggttaaacatttttttaaccaatcaccgttattccttct 36441496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36440856 - 36440950
Alignment:
Q  1 gtacgcgacatctgaagaattcgatacatttaagactgtagagcttcggtaagtttcggtttgcaataaatgcacaaagctgttgaatgagagaa 95  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  36440856 gtacgcgacatttgaaaaattcgatacatataagactgtagagcttcggtacgttttggtttgtaataaatgcacaaagctgttgaatgagagaa 36440950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 16061464 - 16061623
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttt-ac-aaatacatgt-------act 367  Q
    |||||||||||| ||  |||||||||||| |||||||  | ||||| ||||||||||||||||||||||||||||| || ||| || ||        |||    
T  16061464 aatcttctatttaaattgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaagacgtgcttttttaact 16061563  T
Q  368 tggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    | ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||    
T  16061564 tagaaatagaaacatggaacctgattttttacttagaaattgaaacatgaaacatgttta 16061623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 6132038 - 6131961
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||||||||||||| || ||||| ||||||||| |||||||| ||||||||||||    
T  6132038 aatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttac 6131961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 6087060 - 6087137
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||| ||||| ||  ||||||||||||||||||||  | ||||| ||||||||| |||||||||||||||||||||    
T  6087060 aatcttatatttaaattgaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttac 6087137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 427
Target Start/End: Complemental strand, 38138829 - 38138689
Alignment:
Q  295 gaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttggaaatagaaacatagga 386  Q
    |||||||||||||||||||| || ||||  | || |||||||||| | ||||||||||||| ||| ||||||      |||| |||| ||||||||   |    
T  38138829 gaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaaagacatgtttcttaacttagaaaaagaaacatgaaa 38138730  T
Q  387 catgattttttacttggaaattgaaacatgaaacatgttta 427  Q
     |||||||||||||| ||||||||| |||||||||||||||    
T  38138729 tatgattttttacttagaaattgaatcatgaaacatgttta 38138689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 6166462 - 6166387
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttt 352  Q
    |||||||||||| ||   ||||||||||||||||||| || ||||| |||||||||||||||||  ||||||||||    
T  6166462 aatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaattattttt 6166387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 18886254 - 18886184
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataatta-tattagtcaccgaaatcaaaattagcaatta 347  Q
    |||||||||||| ||  |||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  18886254 aatcttctatttaaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 16061381 - 16061427
Alignment:
Q  189 ccgtccttatgaaactggaggctcggctatcatagtaaaaataggcc 235  Q
    |||||| ||| ||||||||||||||||| || |||||||||||||||    
T  16061381 ccgtccctataaaactggaggctcggctctcgtagtaaaaataggcc 16061427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 527
Target Start/End: Complemental strand, 54779490 - 54779456
Alignment:
Q  493 gggaggcccagctcggttgagctctttgcactccc 527  Q
    ||||||||||||||||||||||| |||||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccc 54779456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 32727986 - 32728063
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||| ||||||  | ||||| |||| |||| ||||||| |||||||||||||    
T  32727986 aatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttac 32728063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 16061673 - 16061705
Alignment:
Q  495 gaggcccagctcggttgagctctttgcactccc 527  Q
    |||||||||||| ||||||||||||||||||||    
T  16061673 gaggcccagctcagttgagctctttgcactccc 16061705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 42522799 - 42522850
Alignment:
Q  475 cttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
    |||||||| ||||| |||||||||| || ||||||||| ||||||||||||||    
T  42522799 cttgaggctcatca-tttgggaggctcaactcggttgaactctttgcactccc 42522850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 44767334 - 44767491
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||      ||||     
T  44767334 aatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttactaaatacatgttttttaactta 44767433  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||| | |  ||||||||||||| |||||||||||||||||||||||||    
T  44767434 gaaatagaaacatggaatgtgattttttacttagaaattgaaacatgaaacatgttta 44767491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 27224296 - 27224451
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  || ||||||      ||||     
T  27224296 aatcttctatttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttactgaagacatgttttttaactta 27224393  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    |||||||||||||   |||||||||||||||| ||||||||||||| |||||||||||    
T  27224394 gaaatagaaacatgcaacatgattttttacttagaaattgaaacataaaacatgttta 27224451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 527
Target Start/End: Original strand, 33540107 - 33540366
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||| ||| || |||      ||||     
T  33540107 aatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaagacctgttttttaactta 33540206  T
Q  370 gaaatagaaacataggacatga-ttttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaata-a 467  Q
    ||||| ||||||| | |||||| |||||||||| |||||||||||||||||||| ||||            |||| |||||| ||||||||| |||||      
T  33540207 gaaattgaaacatggaacatgatttttttacttagaaattgaaacatgaaacatatttatttttcttttctgagtgggggtggggatattgagcaatatt 33540306  T
Q  468 nnnnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
           |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  33540307 tttttttcttgaggcccatcactttgggatgcccaactcagttgagctctttgcactccc 33540366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 282 - 527
Target Start/End: Original strand, 38190283 - 38190537
Alignment:
Q  282 ttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttggaaa 373  Q
    |||||||| ||  |||||||||||||||||||| || ||||| |||| ||||||||||||| |||||||||||| ||| || |||      |||| ||||    
T  38190283 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaaagacgtgttttttaacttagaaa 38190382  T
Q  374 tagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnn 473  Q
    || ||||||   |||||||||||||||| ||||||||||||||||||||||||             |||| |||||| ||||||||| || |||          
T  38190383 taaaaacatgaaacatgattttttacttagaaattgaaacatgaaacatgttttttttttttttttgagtgggggtggggatattgagcattaatttttt 38190482  T
Q  474 n-cttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
      ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  38190483 ttctttagatccatcactttgggaggcccagctcggttgagctctttgcactccc 38190537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 527
Target Start/End: Original strand, 22317695 - 22317950
Alignment:
Q  279 atcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttgg 370  Q
    ||||||||||| ||  |||||||  |||||||||||||| ||||||||| |||||||||||||| |||||||||||| | | || |||      ||||      
T  22317695 atcttctatttaaattgaaaatactactcgtataattattattagtcactgaaatcaaaattagaaattatttttactacagacgtgttttttaacttat 22317794  T
Q  371 aaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannn 470  Q
    ||||||||||||   |||||||||||||||| ||||||||||||| |||||||||||            ||| || |||  ||||||||| ||||||       
T  22317795 aaatagaaacatgaaacatgattttttacttagaaattgaaacataaaacatgtttatttttcttttttgag-tgcggtcgggatattgagcaataattt 22317893  T
Q  471 nnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
        |||||| |||||||||||  |||||||||||||||||| ||||||||||||||    
T  22317894 ttttcttgagacccatcactttaagaggcccagctcggttgaactctttgcactccc 22317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 278 - 526
Target Start/End: Original strand, 19468337 - 19468591
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgta------cttg 369  Q
    |||||| ||||| ||  |||||||||| ||||||||| || ||||| |||| ||||  |||||||||||||||||||| ||| | |||||      |||     
T  19468337 aatcttttatttaaattgaaaataacattcgtataatgattattagccacc-aaatataaattagcaattatttttactaaaaatatgtattttaactta 19468435  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataann 469  Q
    |||||||||| || | |||||||||||||||| |||||||||||||||||||||||||             | | ||||||   ||||||||||||||      
T  19468436 gaaatagaaatatggaacatgattttttacttagaaattgaaacatgaaacatgtttatttatttatttttaatgggggtg-acatattgaacaataatt 19468534  T
Q  470 nnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactcc 526  Q
         |||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  19468535 tttttcttgagacccatcactttggaagacccagctcggttgagctctttgcactcc 19468591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 40230974 - 40230894
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttacaaa 357  Q
    |||||||||||| ||  || ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||    
T  40230974 aatcttctatttaaattgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattatttttacaaa 40230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 39608225 - 39608148
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||||| |||||||| | ||||| ||||||||| ||||||| |||||||||||||    
T  39608225 aatcttctatttaaattgaaaataacactggtataattgttattagccaccgaaattaaaattaacaattatttttac 39608148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 27224501 - 27224552
Alignment:
Q  475 cttgaggcccatcactttgggaggcccagctcggttgagctctttgcactcc 526  Q
    |||||||||||||| ||| | ||||||| |||| ||||||||||||||||||    
T  27224501 cttgaggcccatcatttttgaaggcccaactcgattgagctctttgcactcc 27224552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 39608315 - 39608265
Alignment:
Q  184 caggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggc 234  Q
    |||| |||||| ||| ||||||||||||||||| || ||||||||||||||    
T  39608315 cagggccgtccctataaaactggaggctcggctctcgtagtaaaaataggc 39608265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 278 - 540
Target Start/End: Complemental strand, 2104171 - 2103902
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||| || |||| || ||||| |||| |||||||||||||||||||||||||| ||| || | |      ||||     
T  2104171 aatcttctatttaaattgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattatttttacgaaagacgtattttttaactta 2104072  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataann 469  Q
    |||||| ||||||   ||||||||||| |||| |||||||||||||||||||||||||            |||| |||||| ||||||||| ||||||      
T  2104071 gaaatataaacatgaaacatgattttt-acttagaaattgaaacatgaaacatgtttaattttcttttttgagtgggggtggggatattgagcaataatt 2103973  T
Q  470 nnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactcccaaggaacagccct 540  Q
         |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||    
T  2103972 tttttcttgaggcccatcactttgggaggtccagctcggttgagctctttgcactccctaagaacggccct 2103902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 282 - 527
Target Start/End: Complemental strand, 30707119 - 30706875
Alignment:
Q  282 ttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttacaaatacatgtacttggaaatagaaac 380  Q
    |||||||| ||  |||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||| | ||||   | || ||||||||||||     
T  30707119 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt-ctaatatg-gaacatggaaatagaaat 30707022  T
Q  381 ataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgag 480  Q
    || | ||||||||||||||||  ||||||||||||||||||||||||            ||||||| ||| ||||||||| || |||       ||||||    
T  30707021 atggaacatgattttttacttaaaaattgaaacatgaaacatgtttatttttcttttttgagttggtgtggggatattgagcagtaatttttttcttgag 30706922  T
Q  481 gcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
    |||||||||||||||||  ||| ||| ||||| ||||||||||||||    
T  30706921 gcccatcactttgggagatccaactcagttgaactctttgcactccc 30706875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 44259836 - 44259993
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    ||||||||| || ||  |||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||| || |||      ||||     
T  44259836 aatcttctagttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttactaaagacgtgtttttaaactta 44259935  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| ||||||| ||||    
T  44259936 gaaatagaaacataaaacatgattttttacttagaaattgaaacaagaaacattttta 44259993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 26290505 - 26290428
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||||||||||  | ||||| || |||||| |||||||||||||||||||||    
T  26290505 aatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttac 26290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 5868993 - 5869070
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataat-tatattagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||||||||||   |||||| |||| |||| |||||||| ||||||||||||    
T  5868993 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttac 5869070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 18242158 - 18242235
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataat-tatattagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||||||||||   |||||  |||| |||| |||||||||||||||||||||    
T  18242158 aatcttctatttaaatcgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttac 18242235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 2104257 - 2104201
Alignment:
Q  184 caggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggcccttaa 240  Q
    |||| |||||| ||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  2104257 cagggccgtccctatgaaactagaggctcggctctcatggtaaaaataagcccttaa 2104201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 7162744 - 7162696
Alignment:
Q  475 cttgaggcccatcactttgggaggcccagctcggttgagctctttgcac 523  Q
    |||||||||||||  | |||||||||||||||| ||||||| |||||||    
T  7162744 cttgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcac 7162696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 18242070 - 18242118
Alignment:
Q  185 aggaccgtccttatgaaactggaggctcggctatcatagtaaaaatagg 233  Q
    |||||||||| ||| |||||||||||| |||| || |||||||||||||    
T  18242070 aggaccgtccctataaaactggaggcttggctctcgtagtaaaaatagg 18242118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 295 - 527
Target Start/End: Original strand, 6976593 - 6976827
Alignment:
Q  295 gaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgtacttggaaatagaaacataggacatgat 392  Q
    |||||||||| ||||||||| || ||||| |||| |||| ||||||||||||||||||||| ||| || | |  ||  |||||| ||||| | |||||||    
T  6976593 gaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttactaaagacgtattttttaaaatagtaacatggaacatgat 6976692  T
Q  393 tttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgaggcccatcacttt 492  Q
    |||||| || ||||||||||||||||| |||||||            |||| ||| || ||||||||||||||||       ||||||| ||||||||||    
T  6976693 tttttatttagaaattgaaacatgaaatatgtttatttttcttttctgagtggggatggggatattgaacaataatttttttcttgaggtccatcacttt 6976792  T
Q  493 gggaggcccagctcggttgagctctttgcactccc 527  Q
    |||||||||| ||||||||| ||||||||||||||    
T  6976793 gggaggcccaactcggttgaactctttgcactccc 6976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 295 - 527
Target Start/End: Complemental strand, 24534965 - 24534725
Alignment:
Q  295 gaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttacaaatacatgt-------acttggaaatagaaacatagga 386  Q
    |||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||| || |  |||       | || ||||||||||||| | |    
T  24534965 gaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaaatctgtttttttaatttagaaatagaaacatggaa 24534866  T
Q  387 catgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgaggcccat 486  Q
    ||| ||| ||||||| |||||||||||||||||||||||||            |||| ||| || | ||||||| ||||||       ||||||||||||    
T  24534865 cataattctttacttagaaattgaaacatgaaacatgtttatttttcttttttgagtagggatgagaatattgagcaataatttttttcttgaggcccat 24534766  T
Q  487 cactttgggaggcccagctcggttgagctctttgcactccc 527  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  24534765 cactttgggaggcccagctcgattgagctcgttgcactccc 24534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 278 - 529
Target Start/End: Complemental strand, 9946801 - 9946541
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttacaaatacatgt---------act 367  Q
    |||||||||||| ||  |||||||||||||||||||| || ||||  |||| |||||||||||| ||||||||||||| || | ||||         |||    
T  9946801 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaa-agatgtgcttttttaact 9946703  T
Q  368 tggaaatagaaacataggacatgatttttt-acttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaata 466  Q
    |  |||||||||||| | |  ||||||||| |||| |||||||||||||||||||||||||            |||| |||||| ||||||||| ||||     
T  9946702 taaaaatagaaacatggaatctgatttttttacttagaaattgaaacatgaaacatgtttagttttcttttt-gagtgggggtggggatattgagcaatg 9946604  T
Q  467 annnnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactcccaa 529  Q
    |       |||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  9946603 atttttttcttgaggcccatcactttaggagatccagctcggttgagctctttgcactcccaa 9946541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 33474642 - 33474536
Alignment:
Q  328 gaaatcaaaattagcaattatttttac-aaatacatgt------acttggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaac 420  Q
    ||||||||||||||||||||||||||| ||| || |||      |||| ||||||||||||| | ||||||||||||| || ||||||||||||||||||    
T  33474642 gaaatcaaaattagcaattatttttactaaagacgtgtttttaaacttagaaatagaaacatggaacatgattttttagttagaaattgaaacatgaaac 33474543  T
Q  421 atgttta 427  Q
    |||||||    
T  33474542 atgttta 33474536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 21466803 - 21466862
Alignment:
Q  181 attcaggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggcccttaa 240  Q
    ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  21466803 attcagggccgtcattatgaaactggaggcttggctctcatagtaaaaataggcccttaa 21466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 13751454 - 13751531
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||||||||||||| || ||||| || |||||| |||||||||||||||||||||    
T  13751454 aatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttac 13751531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 276 - 524
Target Start/End: Original strand, 44004328 - 44004591
Alignment:
Q  276 taaatcttctatttcaacagaaaataacactcgtataatta-tattagtcaccgaaatcaaaattagcaattatttttac-aaatacatg-----tactt 368  Q
    |||||||||||||| ||  |||||||||||||||||||| | |||||| || | |||||||||||| ||||||||||||| ||| || ||     ||  |    
T  44004328 taaatcttctatttaaattgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaaagacgtgttttttaact 44004427  T
Q  369 ggaaatagaaacataggacatg-------attttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaa 461  Q
     ||||||||||||| | |||||       | ||||||||| |||||||||||||||||||||||||            |||| |||||| |||||||||     
T  44004428 agaaatagaaacatggaacatgactttttagtttttacttagaaattgaaacatgaaacatgtttatttttcttttttgagtgggggtggggatattgag 44004527  T
Q  462 caataa-nnnnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcact 524  Q
    ||||||        |||||||||||||||||| |||| |||||||| ||||| |||||||||||    
T  44004528 caataattttttttcttgaggcccatcacttttggagacccagctccgttgaactctttgcact 44004591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 21467022 - 21467063
Alignment:
Q  386 acatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  21467022 acatgattttttacatagaaattgaaacatgaaacatgttta 21467063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 496 - 524
Target Start/End: Original strand, 21467115 - 21467143
Alignment:
Q  496 aggcccagctcggttgagctctttgcact 524  Q
    |||||||||||||||||||||||||||||    
T  21467115 aggcccagctcggttgagctctttgcact 21467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 33474470 - 33474426
Alignment:
Q  480 ggcccatcactttgggaggcccagctcggttgagctctttgcact 524  Q
    ||||||||||||||| |||||| | ||||||||||||||| ||||    
T  33474470 ggcccatcactttggaaggcccggttcggttgagctctttccact 33474426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 45231732 - 45231680
Alignment:
Q  184 caggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggccc 236  Q
    |||| |||||| ||| ||||||||||||||||| || || |||||||||||||    
T  45231732 caggtccgtccctataaaactggaggctcggctctcgtaataaaaataggccc 45231680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 527
Target Start/End: Original strand, 5882540 - 5882797
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||  ||  ||||||||| |||||||||| || ||||  |||||||||||||||||  |||||||||||| ||| || |||      ||||     
T  5882540 aatcttctattaaaattgaaaataacgctcgtataataattattaaccaccgaaatcaaaattaataattatttttactaaagacgtgttttttaactta 5882639  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataann 469  Q
    ||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||            |||| |||||| ||||||||| ||||||      
T  5882640 gaaattgaaacatggaacatgattttttacttagaaattgaaacatgaaacatgtttacttttcttttttgagtgggggtggggatattgagcaataatt 5882739  T
Q  470 nnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
         |||||||||||||||| |||||||| ||||||||||||  ||||| |||||||    
T  5882740 tttttcttgaggcccatcactctgggaggctcagctcggttgaattctttacactccc 5882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 50509869 - 50509796
Alignment:
Q  282 ttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||| ||  |||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||    
T  50509869 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttac 50509796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 24892022 - 24892172
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt-------actt 368  Q
    |||||||||||| ||  ||||||||||||||||||||  | ||||| |||| ||| |||||||| ||||||||||||| ||| || ||        ||||    
T  24892022 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaagacgtgcttttttaactt 24892121  T
Q  369 ggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaa 419  Q
     ||||||||||||| | || ||||||||||||| |||||||||||||||||    
T  24892122 agaaatagaaacatggaacctgattttttacttagaaattgaaacatgaaa 24892172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 9672579 - 9672504
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttt 352  Q
    |||||||||||| ||   ||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||    
T  9672579 aatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 527
Target Start/End: Complemental strand, 9672390 - 9672255
Alignment:
Q  392 ttttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgaggcccatcactt 491  Q
    |||||||||| |||||||||||||||||||||||||            |||| ||| || ||||||||| ||||||       |||||||||| ||||||    
T  9672390 ttttttacttagaaattgaaacatgaaacatgtttatttttcctttttgagtggggatggggatattgagcaataatttttttcttgaggcccgtcactt 9672291  T
Q  492 tgggaggcccagctcggttgagctctttgcactccc 527  Q
    | |||||||| |||||||||| |||||| |||||||    
T  9672290 taggaggccctgctcggttgaactctttacactccc 9672255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 525
Target Start/End: Original strand, 23688635 - 23688685
Alignment:
Q  475 cttgaggcccatcactttgggaggcccagctcggttgagctctttgcactc 525  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  23688635 cttgagtcccatcattttgggaggcccagctcggttgaactctttgcactc 23688685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 7380386 - 7380463
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||| ||| ||  | ||||||||||||||| |||||||||||||||||||||    
T  7380386 aatcttctatttaaattgaaaataacactcatattatggttattagtcaccgaaattaaaattagcaattatttttac 7380463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 23688394 - 23688471
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataatta-tattagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||||||||||||| | |||| |||||  |||||||||||| |||||||||||||    
T  23688394 aatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttac 23688471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 26687705 - 26687782
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataatta-tattagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||||||||||||| | |||||  ||||||||| ||||||| |||||||||||||    
T  26687705 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttac 26687782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 527
Target Start/End: Original strand, 24892233 - 24892276
Alignment:
Q  484 catcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  24892233 catcactttagaaggcccagctcggttgagctctttgcactccc 24892276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 24891928 - 24891980
Alignment:
Q  183 tcaggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggcc 235  Q
    |||||||| ||||||| ||||||||||||| ||| || |||||||||||||||    
T  24891928 tcaggaccatccttataaaactggaggctcagctgtcgtagtaaaaataggcc 24891980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 27565009 - 27564957
Alignment:
Q  371 aaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatg 423  Q
    |||||||||||||| ||||| ||||||||||  |||| |||||||| ||||||    
T  27565009 aaatagaaacatagaacatgtttttttacttaaaaatagaaacatggaacatg 27564957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 29864682 - 29864758
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttta 353  Q
    |||||||||||| ||  ||||||||||   ||||||| || ||||| |||| |||| ||||||||||||||||||||    
T  29864682 aatcttctatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattattttta 29864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 296 - 527
Target Start/End: Original strand, 26497884 - 26498124
Alignment:
Q  296 aaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttggaaatagaaacataggac 387  Q
    |||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||| ||| || |||      |||| ||||||||||||| | ||    
T  26497884 aaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaagacgtgttttttaacttagaaatagaaacatggaac 26497983  T
Q  388 atga-ttttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaataannnnnnncttgaggcccat 486  Q
    |||| ||||||| || |||||||||||||||||||||||||             ||| |||||| ||||||||| ||||||       ||||||||||||    
T  26497984 atgatttttttatttagaaattgaaacatgaaacatgtttatttttcttttttcagtgggggtggggatattgagcaataatttttttcttgaggcccat 26498083  T
Q  487 cactttgggaggcccagctcggttgagctctttgcactccc 527  Q
    ||||||| || |||||||||  ||||| |||||||||||||    
T  26498084 cactttgagaagcccagctcaattgagatctttgcactccc 26498124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 7201192 - 7201035
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||||||||| ||| || |||      ||||     
T  7201192 aatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttactaaagacgtgttttttaactta 7201093  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    |||||||||||||   ||||||||||| |||| |||||||||||||||||||||||||    
T  7201092 gaaatagaaacatgaaacatgatttttgacttagaaattgaaacatgaaacatgttta 7201035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 609838 - 609900
Alignment:
Q  479 aggcccatcactttgggaggcccagctcggttgagctctttgcac-tcccaaggaacagccct 540  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  609838 aggcccaccactttgggaggcccagctcggttgagctctttgcacttcccaaagaacggccct 609900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 3361918 - 3361856
Alignment:
Q  365 acttggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    |||| ||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||    
T  3361918 acttagaaatagaaacatggaacatgattttttacttagaaattgaaacatgaaacatattta 3361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 10670134 - 10670083
Alignment:
Q  189 ccgtccttatgaaactggaggctcggctatcatagtaaaaataggcccttaa 240  Q
    |||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  10670134 ccgtccctatgaaactggaggctcgactctcatagtaaaaataggcccttaa 10670083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 10670051 - 10669894
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||   |||||||||  |||||||| || ||||||||| |||||||||||||| ||||| |||||| ||| |  |||      | ||     
T  10670051 aatcttctatttaaattaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttactaaaaatgtgttttttaattta 10669952  T
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||||||||| ||||    
T  10669951 gaaatagaaacatggaacatgattttttacttagaaattaaaacatgaaacatattta 10669894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 1112507 - 1112584
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  |||||||||| |||||||||  | ||||| ||||||||| |||||||||||||||||||||    
T  1112507 aatcttctatttaaattgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttac 1112584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 28847797 - 28847937
Alignment:
Q  296 aaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttggaaatagaaacataggac 387  Q
    ||||||||||  ||||||| || ||||| ||| ||||||||||||| ||||||||||||| ||| |  |||      |||| |||||| |||||| | ||    
T  28847797 aaaataacacatgtataatgattattagccactgaaatcaaaattaacaattatttttactaaagatgtgttttttaactttgaaataaaaacatggaac 28847896  T
Q  388 atgatttttt-acttggaaattgaaacatgaaacatgttta 427  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  28847897 atgatttttttacttagaaattgaaacatgaaacatgttta 28847937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 609725 - 609788
Alignment:
Q  365 acttggaaatagaaacataggacatgatttttt-acttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||||||||   |||||||||||| ||||  ||||||||||||||||||||||||    
T  609725 acttggaaatagaaacatgaaacatgatttttttacttataaattgaaacatgaaacatgttta 609788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 609542 - 609598
Alignment:
Q  184 caggaccgtccttatgaaactggaggctcggctatcatagtaaaaataggcccttaa 240  Q
    |||| ||||| |||||||||||||||||||| | | || ||||||||||||||||||    
T  609542 cagggccgtcattatgaaactggaggctcggtttttattgtaaaaataggcccttaa 609598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 33986514 - 33986452
Alignment:
Q  365 acttggaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    |||| |||||| |||||| |  ||| ||||||||||| ||||||||||||||||| |||||||    
T  33986514 acttagaaataaaaacatggagcataattttttacttagaaattgaaacatgaaatatgttta 33986452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 26497775 - 26497824
Alignment:
Q  183 tcaggaccgtccttatgaaactggaggctcggctatcatagtaaaaatag 232  Q
    ||||| || ||| ||||||||| ||||||||||| |||||||||||||||    
T  26497775 tcagggccatccctatgaaactagaggctcggctctcatagtaaaaatag 26497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 17364324 - 17364249
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttta 353  Q
    |||||||||||| ||  ||||| ||||  |||||||| || ||||| ||||||| ||||||||||||||||||||||    
T  17364324 aatcttctatttaaattgaaaagaacagccgtataatgattattagccaccgaa-tcaaaattagcaattattttta 17364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 28847988 - 28848020
Alignment:
Q  495 gaggcccagctcggttgagctctttgcactccc 527  Q
    ||||||||||||||||||||| |||||||||||    
T  28847988 gaggcccagctcggttgagctttttgcactccc 28848020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 29288532 - 29288588
Alignment:
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttt 426  Q
    ||||||||||||| | |||||  ||||||||| ||||| | ||||||||||||||||    
T  29288532 gaaatagaaacatggaacatgtgtttttacttagaaatagtaacatgaaacatgttt 29288588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 527
Target Start/End: Original strand, 6967411 - 6967568
Alignment:
Q  371 aaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgtttannnnnnnnnnnn-gagttggggtgtggatattgaacaataann 469  Q
    ||||||||||||   ||||||||||||||||  ||||||||||||||||||||||||             || | |||||| ||||||||||||||||      
T  6967411 aaatagaaacatgaaacatgattttttacttaaaaattgaaacatgaaacatgtttatttttctttttttgattgggggtggggatattgaacaataatt 6967510  T
Q  470 nnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactccc 527  Q
         ||||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  6967511 tttttcttgaggccaatcactttgggaggcccaactcgattgagctctttgcactccc 6967568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 11245471 - 11245313
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    |||||||||||| ||  |||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||||| ||| |  |||      ||||     
T  11245471 aatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttactaaagatgtgtttttaaactta 11245372  T
Q  370 gaaatagaaacataggacatga-ttttttacttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||| | |||||| ||||||||||  ||||||||||||||||||| ||||    
T  11245371 gaaatagaaacatggaacatgatttttttacttcaaaattgaaacatgaaacatattta 11245313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 278 - 525
Target Start/End: Complemental strand, 22868123 - 22867865
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac-aaatacatgt------acttg 369  Q
    ||||||| |||| ||  ||||| |||||||||||||| || ||||| ||| ||||||| ||||||||||||||||||| ||| || |||      ||||     
T  22868123 aatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaaagacgtgttttaaaactta 22868024  T
Q  370 gaaatagaaacataggacatgatttttt---acttggaaattgaaacatgaaacatgtttannnnnnnnnnnngagttggggtgtggatattgaacaata 466  Q
    ||||||||||||| | ||||||||||||   |||| ||||||| |||||||||||||||||            |||| ||||||  |||||||| |||||    
T  22868023 gaaatagaaacatggaacatgatttttttttacttagaaattgcaacatgaaacatgtttatttttcttttttgagtgggggtggagatattgagcaata 22867924  T
Q  467 annnnnnncttgaggcccatcactttgggaggcccagctcggttgagctctttgcactc 525  Q
    |       || ||  | |||||||||||||||||||||||| |||| ||||||||||||    
T  22867923 atttttttctcgaatctcatcactttgggaggcccagctcgattgaactctttgcactc 22867865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 27246300 - 27246227
Alignment:
Q  282 ttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||| ||  |||||||||||||||||||| || ||||| || ||||||||||||||||||||| ||||||    
T  27246300 ttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattacttttac 27246227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 9364160 - 9364111
Alignment:
Q  476 ttgaggcccatcactttgggaggcccagctcggttgagctctttgcactc 525  Q
    ||||||||||| |||  |||||||||||||| |||||||| |||||||||    
T  9364160 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcactc 9364111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 523
Target Start/End: Original strand, 33046396 - 33046428
Alignment:
Q  491 ttgggaggcccagctcggttgagctctttgcac 523  Q
    ||||||||||||||||||||||||| |||||||    
T  33046396 ttgggaggcccagctcggttgagctgtttgcac 33046428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 42624742 - 42624685
Alignment:
Q  370 gaaatagaaacataggacatgattttttacttggaaattgaaacatgaaacatgttta 427  Q
    ||||||||||||| | || | |||||||||||  ||||||||||||||||||||||||    
T  42624742 gaaatagaaacatggaacctaattttttacttaaaaattgaaacatgaaacatgttta 42624685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 54561188 - 54561111
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttttac 354  Q
    |||||||||||| ||  ||||||||||||| |||||| || |||||  ||| ||||||||||||||||||| ||||||    
T  54561188 aatcttctatttaaattgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttac 54561111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 42624843 - 42624767
Alignment:
Q  278 aatcttctatttcaacagaaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattattttta 353  Q
    |||||||||||| ||  || | |||||||||||||||  | ||||| ||||||||| ||||||||||||||||||||    
T  42624843 aatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattattttta 42624767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 5825 - 5865
Alignment:
Q  317 tattagtcaccgaaatcaaaattagcaattatttttacaaa 357  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  5825 tattagccaccgaaatcaaaattagcaattattttgacaaa 5865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 284300 - 284356
Alignment:
Q  296 aaaataacactcgtataattat-attagtcaccgaaatcaaaattagcaattatttt 351  Q
    ||||||||||||| ||||| || ||||  ||||||||| ||||||||||||||||||    
T  284300 aaaataacactcgcataatgattattaaccaccgaaattaaaattagcaattatttt 284356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University