View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_56 (Length: 251)
Name: NF11959_low_56
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 52824741 - 52824937
Alignment:
| Q |
1 |
tagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatttctttcacattttgt |
100 |
Q |
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| T |
52824741 |
tagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttcttcataaatcagtgtaaaatattaaatatgtctttcacattttgt |
52824840 |
T |
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| Q |
101 |
aaataagatctttaattgaattaaataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
197 |
Q |
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| T |
52824841 |
aaataagatctttaattgaattaaataactcaacttgattgattaatttttgtttgcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 52824960 - 52825003
Alignment:
| Q |
197 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
240 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
52825003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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