View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_60 (Length: 244)
Name: NF11959_low_60
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_60 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 1974211 - 1974443
Alignment:
| Q |
12 |
gacatcaaattctgacagctacattgaagtgaatgaagaagacaaaccttaaccgaaccctcaacttttcctagagtaagggtcttacgaaatacagttt |
111 |
Q |
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| T |
1974211 |
gacatcaaattctgacagctacattgaagtgaatgaagaagacaaaccttaaccgaaccctcaacttttcctagagtaagggtcttacgaaatacagttt |
1974310 |
T |
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| Q |
112 |
ctgtgagactcgaacttgtattgacggcatgattgtcctttttaaatttttccatgttcaatgtagaagtggcttcttccattaaagccaaaattctgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1974311 |
ctgtgagactcgaacttgtattgacggcatgattgtcctttttaaatttttccatgttcaatgtagaagtggcttcttccattaaagccaaaattctgca |
1974410 |
T |
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| Q |
212 |
tatcataatgtccaaatgtaaacaagtgaattt |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1974411 |
tatcataatgtccaaatgtaaacaagtgaattt |
1974443 |
T |
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