View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_66 (Length: 230)
Name: NF11959_low_66
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 32394795 - 32394991
Alignment:
| Q |
21 |
tgccggagtccacgtccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggc |
120 |
Q |
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| T |
32394795 |
tgccggagtccacgttcctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggc |
32394894 |
T |
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| Q |
121 |
tccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtctctg |
217 |
Q |
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| T |
32394895 |
tccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtttctg |
32394991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 32392738 - 32392873
Alignment:
| Q |
23 |
ccggagtccacgtccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctc |
122 |
Q |
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| T |
32392738 |
ccggagtccacatccctctattgaccggatcaaaattggcgccggcgcccggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttc |
32392837 |
T |
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| Q |
123 |
cggaatcatgtcaattccggcgattctcaaagttct |
158 |
Q |
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| T |
32392838 |
tggaatcatgtccattccggcaattctaaaagttct |
32392873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 1971494 - 1971597
Alignment:
| Q |
88 |
gccgtattcaatgtcgccaccagcataattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattc |
187 |
Q |
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| T |
1971494 |
gccgtattcaatgtcgcccccagcataatcggctccggaatcatttaaattccggcgattctcaaagttctcggcgtgcttccttctttcgccttgattc |
1971593 |
T |
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| Q |
188 |
ttat |
191 |
Q |
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|||| |
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| T |
1971594 |
ttat |
1971597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 19962540 - 19962578
Alignment:
| Q |
153 |
agttctcggtgtgcttccttccttcgccttgattcttat |
191 |
Q |
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| T |
19962540 |
agttctcggcgtgcttccttctttcgccttgattcttat |
19962578 |
T |
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