View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_low_7 (Length: 583)
Name: NF11959_low_7
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 32394963 - 32395544
Alignment:
| Q |
1 |
tattgttgccgtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32394963 |
tattgttgccgtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagctttt |
32395062 |
T |
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| Q |
101 |
gggtccgttggagctttaagcgctcaagtttgttttataatcactaactttgggggtttagttctcttcctaattatcattggttagaacttagaaccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32395063 |
gggtccgttggagctttaagcgctcaagtttgtgttataatcactaactttgggggtttagttctcttcctaattatcattggttagaacttagaaccaa |
32395162 |
T |
|
| Q |
201 |
tttaatctctttcttttattcttaattaaattctaaatcattaattaagagagctaaatattcaccttttgggttaannnnnnngtttatgaaagtttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32395163 |
tttaatctctttcttttattcttaattaaattctaaatcattaattaagagagctaaatattcaccttttgggttaatttttttgtttatgaaagtttga |
32395262 |
T |
|
| Q |
301 |
atttgggatttggtttgtgagcaaaaccaagttgattggtgaagttttacactttaaagtttggnnnnnnnnatgtttgtgatgttgaaaagatatgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32395263 |
atttgggatttggtttgtgagcaaaaccaagttgattggtgaagttttacactttaaagtttgg-tttttttatgtttgtgatgttgaaaagatatgttt |
32395361 |
T |
|
| Q |
401 |
ttgaatgatgggtagttgcttgttttcatttgttgatgtttgtgtgtgatggaacaacaggcgatgttttatctggaaaggaaagtggaggtgaagtgca |
500 |
Q |
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| T |
32395362 |
ttgaatgatgggtagttgcttgttttcatttgttgatgtttgtgtgtgatggaacaacaggggatgttttatctggaaaggaaagtggaggtgaagtgca |
32395461 |
T |
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| Q |
501 |
cttgggacttttgcaacagtggtttgggattcattggtggaattcaagggaagttgctctttttatcaccttggttcttgtta |
583 |
Q |
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| T |
32395462 |
cttgggacttttgcaacagtggtttgggattcattggtggaattcgagggaagttgctctttttatcaccttggttcttgtta |
32395544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 32392914 - 32393115
Alignment:
| Q |
11 |
gtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttttgggtccgttg |
110 |
Q |
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||||| || |||||||| || ||||||||||||||||||||| | || ||||||| || || || || |||| |||| |||||||||||| || |||| |
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| T |
32392914 |
gtgcttgctgaagtttcagtggattttctcatgcgttttacagaagcaggtgtaaagacaacgtatgctagtgtgatgagggaagcttttggatctgttg |
32393013 |
T |
|
| Q |
111 |
gagctttaagcgctcaagtttgttttataatcactaactttgggggtttagttctcttcctaattatcattggttagaacttagaaccaatttaatctct |
210 |
Q |
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||| |||| | || ||||| | | ||||||| ||||||||||||||| ||||||| || ||||||||||||||| ||||||| |||||||||||| |
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| T |
32393014 |
gaggattaatcactaaagttattgtcataatcaacaactttgggggtttaattctcttgcttattatcattggttag---ttagaactaatttaatctct |
32393110 |
T |
|
| Q |
211 |
ttctt |
215 |
Q |
| |
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||||| |
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| T |
32393111 |
ttctt |
32393115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 1971605 - 1971710
Alignment:
| Q |
11 |
gtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttttgggtccgttg |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||||||| |||| |
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| T |
1971605 |
gtgctcgctgaagtttctgttgattttctcatgcgttttacgcatgccggtgtaaccac-acgtactttggtgttatgaaggaagcttttgggtctgttg |
1971703 |
T |
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| Q |
111 |
gagcttt |
117 |
Q |
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||||||| |
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| T |
1971704 |
gagcttt |
1971710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 19962589 - 19962692
Alignment:
| Q |
14 |
ctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttttgggtccgttggag |
113 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
19962589 |
ctcgctgaagtttttgttgattttctcatgcgttttacacatgcccgtgtaaccacgacgtactttggtgttatgaaggaagcttttgagtctgttggag |
19962688 |
T |
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| Q |
114 |
cttt |
117 |
Q |
| |
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|||| |
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| T |
19962689 |
cttt |
19962692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 36138616 - 36138653
Alignment:
| Q |
509 |
ttttgcaacagtggtttgggattcattggtggaattca |
546 |
Q |
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|||||||||| |||||||| |||||||||||||||||| |
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| T |
36138616 |
ttttgcaacaatggtttggaattcattggtggaattca |
36138653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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