View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11959_low_8 (Length: 532)
Name: NF11959_low_8
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 24 - 524
Target Start/End: Original strand, 49531674 - 49532172
Alignment:
| Q |
24 |
gtgataaatacacaaaaattatgaatgttagatactagtggtactttacattatatcatagaaaaaatgtactttacactacagaaaggtgtaattgtgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531674 |
gtgataaatacacaaaaattatgaatgttagatactagtagtactttacattatatcatagataaaatgtactttacactacagaaaggtgtaattgtgt |
49531773 |
T |
|
| Q |
124 |
tggtatagtttagaattcacgtgaaaataagaaaaaactttataacgtaaatggacccatggtctccattctcaacataaaaatggaagcaatccgtaca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531774 |
tggtatagtttagaattcacgtgaaaataagaaaaaactttataacgtaaatggacccatggtcaccattctcaacataaaaatggaagcaatccgtaca |
49531873 |
T |
|
| Q |
224 |
aagttttagttgagctggaaatacattacttttttctttacattctacatagtaaacaaagttgtcaataaataacatgtggatatgccaactctatagt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531874 |
aagttttagttgagctggaaatacattactttt--ctttacattctacatagtaaacaaagttgtcaataaataacatgtggatatgccaactctatagt |
49531971 |
T |
|
| Q |
324 |
gaagcctagagagtggatcacaagtttgcaacattgcatatgcatacattatatctttatagccaaaaaagataaccctacctgctacactcatttattt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49531972 |
caagcctagagagtggatcacaagtttgcaacattgcatatgcatacattatatctttatagccaaaaaagataaccctacctgctacactcatttattt |
49532071 |
T |
|
| Q |
424 |
cagtagttaattaataagttagctatggattttatcaaacttgtgctggtgaaacttttattgcatatgtactgtttcaatcccacttttcgtcctatgc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49532072 |
cagtagttaattaataagttagctatggattttatcaaacttgtgctggtgaaacttttattgcatatgtactgtttcaatcccacttttcgtcctatgc |
49532171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University