View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11960_high_4 (Length: 323)
Name: NF11960_high_4
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11960_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 11313364 - 11313068
Alignment:
| Q |
10 |
cagagcctgtaaacttgcaagccaaacacatcatgtcttcaagcattaccaacacatcccttccaaaaacagaaccagaacttagcatccaatcattcca |
109 |
Q |
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| T |
11313364 |
cagagcctgtaaacttgcaagccaaacacatcatgtcttcaagcattaccaacacatccctcccaaaaacagaaccagaacttagcatccaatcatttca |
11313265 |
T |
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| Q |
110 |
ccaatgttcaagttttatctccatgaaactgagcacaaacaatttcatattgtggcgtaatcaaatcacacccttagttcgaagtctcggtgttcttcac |
209 |
Q |
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| T |
11313264 |
ccaatgttcaagttttatctccatgaaactgagcacaaacaatttcatattgtggcgtaatcaaatcacacccttagttcgaagtctcggtgttcttcac |
11313165 |
T |
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| Q |
210 |
catctattgagtgaagaaaaaccagaaaaggaagtcaagggtgccacgagtgaaaagagtccaaatccgaactattcaaagtggatcaccaatgatg |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11313164 |
catctattgagtgaagaaaaaccagaagaggaagtcaagggtgccacgggtgaaaagagtccaaatccgaactattcaaagtggatcaccaatgatg |
11313068 |
T |
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