View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11960_low_1 (Length: 732)
Name: NF11960_low_1
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11960_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 52 - 465
Target Start/End: Original strand, 38043615 - 38044028
Alignment:
| Q |
52 |
aatatatatatacaataaaacttgaaaaaacaggattccaaatagtactacatatgacagtttttggatgaactggcacactcatatagttggtccactt |
151 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38043615 |
aatatatatatacaataaaactggaaaaaacaggattccaaatagtactacatatgacagtttttggatgaactggcacactcatatagttggtccactt |
38043714 |
T |
|
| Q |
152 |
cattgagaaatcaaggcacaggaaagtgatgtatcatctcattattcatgcaagatattacaacgaagacatgtcctaaatcaggtcccctctcctttcc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38043715 |
cattgagaaatcaaggcacaggaaagtgatgtatcatctcattattcatgcaagatattacaacgaagacatgtcctaaatcaggtcccctctcctttcc |
38043814 |
T |
|
| Q |
252 |
aataccggttccattttcctgcataagccattgaactcagaatgggtatatgacctatatatggatataaattttatagcacattctcatgttatgtata |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38043815 |
aataccggttccattttcctgcataagccattgaactgagaatgggtatatgacctatatatggatataaattttatagcacattctcatgttatgtata |
38043914 |
T |
|
| Q |
352 |
acataaagatcttattcatcaataatactatatatttaggtgatgctaaatcacataaagatcttgttactgtttttgttataaagtagcattaatttct |
451 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38043915 |
acataaagatctgtttcatcaataatactatatatttaggagatgctaaatcacataaagatcttgttactgtttttgttataaagtagcattaatttct |
38044014 |
T |
|
| Q |
452 |
tgcatatcgaatga |
465 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38044015 |
tgcatatcgaatga |
38044028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 559 - 715
Target Start/End: Original strand, 38045877 - 38046026
Alignment:
| Q |
559 |
ataatcttgtgattcttgtccatgaaattcatatgattatcgtagcatggcttgtcttggtcagctttgaattttcatttatcatgcaatttccgcataa |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38045877 |
ataatcttgtgattcttgtccatgaaattcatatgattatcgtagcatggcttgtcttggtcagctttgaattttcatttatcatgcaatttccgcataa |
38045976 |
T |
|
| Q |
659 |
cacaacaaagaatgacccctactctaatataatatattccatcaataatgtacctat |
715 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38045977 |
cacaacaaagaatgacccctactcta-------atattccatcaataatgtacctat |
38046026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 545
Target Start/End: Original strand, 38045851 - 38045890
Alignment:
| Q |
506 |
atttatgatgggtggatcacaacgttataatcttgtgatt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38045851 |
atttatgatgggtggatcacaacgttataatcttgtgatt |
38045890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University