View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11960_low_2 (Length: 617)

Name: NF11960_low_2
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11960_low_2
NF11960_low_2
[»] chr7 (3 HSPs)
chr7 (5-598)||(7969565-7970159)
chr7 (5-545)||(37576952-37577498)
chr7 (129-190)||(37586681-37586742)
[»] chr1 (2 HSPs)
chr1 (25-454)||(17591260-17591686)
chr1 (27-287)||(17583355-17583615)
[»] chr5 (15 HSPs)
chr5 (31-427)||(32762859-32763248)
chr5 (31-280)||(28474719-28474968)
chr5 (5-243)||(32767733-32767971)
chr5 (37-245)||(32739955-32740163)
chr5 (52-286)||(32858129-32858366)
chr5 (35-243)||(32651840-32652048)
chr5 (2-242)||(25469405-25469645)
chr5 (30-245)||(32656093-32656308)
chr5 (31-216)||(32662009-32662194)
chr5 (35-268)||(32710052-32710294)
chr5 (215-287)||(25477501-25477573)
chr5 (453-545)||(32651534-32651629)
chr5 (319-454)||(28475014-28475146)
chr5 (433-498)||(32768173-32768236)
chr5 (505-545)||(25477662-25477702)
[»] chr4 (2 HSPs)
chr4 (5-275)||(21524383-21524656)
chr4 (318-370)||(2166603-2166655)
[»] chr2 (2 HSPs)
chr2 (24-349)||(16756838-16757170)
chr2 (25-245)||(16752334-16752554)


Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 5 - 598
Target Start/End: Complemental strand, 7970159 - 7969565
Alignment:
Q  5 tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt 104  Q
    ||||||| ||||| || |||||||||  ||||||||| || ||||| |||||||||||||| || |||||||||| |||  ||||||||||||||||||     
T  7970159 tatttattctaaataacaatactatgagtttgggaaaagcagtcaatatttgctgcattggtcctaactcttctgggtccgagtatagttatgatatatc 7970060  T
Q  105 ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970059 ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagaacgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca 7969960  T
Q  205 tttcgttcttctgaacctctcaagctagacatttgcataacccccatggtatgccctatctccttttctttgctttggttttttgtccaattgaagtctt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969959 tttcgttcttctgaacctctcaagctagacatttgcataacccccacggtatgccctatctccttttctttgctttggttttttgtccaattgaagtctt 7969860  T
Q  305 attaatatcttgaatgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnnggttgctagtgttctcta- 403  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||     
T  7969859 attattatctttaatgttttgaatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccaaaaaaaggttgctagtgttctctat 7969760  T
Q  404 tttttgtatcagttcttgaaatatttgtctcaaaatttctcttattgattttgatcatgaacttcttttgtccctgttgtgctgtaataaattttgcaat 503  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969759 tttttgtatcagttcttgaaatatttgtctcaaaatttcttttattgattctgatcatgaacttcttttgtccctgttgtgctgtaataaattttgcaat 7969660  T
Q  504 tttgttttctttatgttgtttttatcattgattaatgcgttgagccattgacaattgatggtgcagatgcaaatctacgtgatgacccaaactgg 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969659 tttgttttctttatgttgtttttatcattgattaatgcgttgagccattgacaattgatggtgcagatgcaaatctacgtgatgacccaaactgg 7969565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 5 - 545
Target Start/End: Original strand, 37576952 - 37577498
Alignment:
Q  5 tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt 104  Q
    ||||||| || || |||| |||||||||||| ||||| ||  |||| ||||| |||||| | ||||| |||||| |||   ||| | |||||||||||||    
T  37576952 tatttattctcaataatagtactatgctttttggaaatgcaatcaatatttgttgcattagtccaaagtcttctcagtacgagtgtggttatgatatatt 37577051  T
Q  105 ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca 204  Q
    |||||  ||| |   |||||||| |||||| ||||| ||||||||||  || |||| |||||||||| |||||||||||| |||||||||||||||||||    
T  37577052 ggctagatctcaagcatgcaaaccgaaatttcagtcgtttgcgaagaatgtgcaacggtttactttatcaactctttcattagagttccttgtgattcca 37577151  T
Q  205 tttcgttcttctgaacctctcaagctagacatttgcataacccccatggtatgccctatctccttttctttgctttggttttttgtccaattgaagtctt 304  Q
    ||| ||||||||||||||||| ||||||| ||||||||| |||||||||||   ||||| |||||||||||||||  ||||||| ||| ||  || ||||    
T  37577152 tttggttcttctgaacctctcgagctagaaatttgcatatcccccatggtacctcctatatccttttctttgctt--gtttttt-tcctatcaaaatctt 37577248  T
Q  305 attaatatcttgaatgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnnggttgctagtg-------- 396  Q
    |||| | ||||   ||||||| |||||||| |||||||    || |||||||||||||||||||| ||||||||       |  |  || ||            
T  37577249 attattttctt--ttgttttgaatttatactctagcat----ttaatctcaaattcatcagtttttcaaatgccaaaaaaagaatattactgttttctaa 37577342  T
Q  397 ttctctatttttgtatcagttcttgaaatatttgt-----ctcaaaatttctcttattgattttgatcatgaacttcttttgtccctgttgtgctgtaat 491  Q
    || |||||||||| || ||||||||||||||  ||     |||||| ||||| ||||||| |||||||||||| |||||||  |||||||||||||||||    
T  37577343 ttttctatttttggattagttcttgaaatatcagtctcaactcaaattttcttttattga-tttgatcatgaatttctttt-accctgttgtgctgtaat 37577440  T
Q  492 aaattttgcaa----ttttgttttctttatgttgtttttatcattgattaatgcgttg 545  Q
    |||||||||||    ||||||||||||| ||||| |||| |||| |||||||| ||||    
T  37577441 aaattttgcaatgggttttgttttctttctgttgcttttgtcatggattaatgtgttg 37577498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 37586681 - 37586742
Alignment:
Q  129 gaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagt 190  Q
    |||||||||||| |||| |||||   |||||| |||||||||| |||||||||||| |||||    
T  37586681 gaaattacagtcgtttgtgaagaatatccaacggtttactttaacaactctttcatgagagt 37586742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 25 - 454
Target Start/End: Original strand, 17591260 - 17591686
Alignment:
Q  25 actatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgca 124  Q
    |||| |||||||||||| || |||||  ||||||||||||| || |||||||||||||| || |||| ||||||||||||||||| |||| |||  ||||    
T  17591260 actacgcttttgggaaatgcagtcaatctttgctgcattggtcctaactcttctgagtccaactataattatgatatattggctaggtctcagaattgca 17591359  T
Q  125 aactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctct 224  Q
     |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  17591360 tactgaaattacagtcttttgcgaagaacgtccaacaagttactttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctct 17591459  T
Q  225 caagctagacatttgcataacccccatggtatgccctatctccttttctttgctttggtttttt-gtccaattgaagtcttattaatatcttgaatgttt 323  Q
    ||||||||| ||||||||||||| || ||||   ||||||||||||||||||||||||||||||  ||||||| ||||||||||| | ||||  |||| |    
T  17591460 caagctagatatttgcataacccgcacggtacctcctatctccttttctttgctttggttttttcctccaattaaagtcttattattttcttttatgtat 17591559  T
Q  324 tggatt--tatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnnggttgctagtgttctctatttttgtatcagttcttg 421  Q
    || |||  ||||| |||||||||||      ||  |||| |||||||| ||||||||       || || ||||||| |||||||||| |||||||||||    
T  17591560 tgaatttatatactctagcatttta------tcttattcttcagtttttcaaatgccaaacaaaggctgttagtgttttctatttttggatcagttcttg 17591653  T
Q  422 aaatatttgtctcaaaatttctcttattgattt 454  Q
    ||||||   ||||||| ||||| ||||||||||    
T  17591654 aaatatcaatctcaaattttctattattgattt 17591686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 27 - 287
Target Start/End: Original strand, 17583355 - 17583615
Alignment:
Q  27 tatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaa 126  Q
    ||||||||||||||| || |||||  ||||||||||||| || ||||||||||||||  | |||||||||||||||||||||| |||| |||||| ||||    
T  17583355 tatgcttttgggaaatgcagtcaatctttgctgcattggtcctaactcttctgagtccgactatagttatgatatattggctaggtctcagatatccaaa 17583454  T
Q  127 ctgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctca 226  Q
    ||||||||||||||||| | ||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  17583455 ctgaaattacagtctttcgtgaagaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctctca 17583554  T
Q  227 agctagacatttgcataacccccatggtatgccctatctccttttctttgctttggttttt 287  Q
    ||||||| |||||||||||||||| ||||   ||||| ||||||||  |||||||||||||    
T  17583555 agctagatatttgcataacccccagggtacctcctatttccttttcaatgctttggttttt 17583615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 31 - 427
Target Start/End: Original strand, 32762859 - 32763248
Alignment:
Q  31 cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactga 130  Q
    ||||| ||||| || ||||| ||||||||| | || || ||||||||||||||  ||||||||||||||||||||||||  ||| |||||||||||||||    
T  32762859 cttttaggaaatgcagtcaatatttgctgcctcggtcctaactcttctgagtctgagtatagttatgatatattggctagctctcagatatgcaaactga 32762958  T
Q  131 aattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagct 230  Q
    ||||||||||||||| ||||| ||||||||   || ||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  32762959 aattacagtcttttgtgaagaacgtccaacgtgttgctttagcaactctttcatcagagtttcttgtgattccatttgcttcttccgaacctctcaagct 32763058  T
Q  231 agacatttgcataacccccatggtatgccctatctccttttctttgctttggttttttgtccaattgaagtcttattaatatcttgaatgttttggattt 330  Q
    ||| |||||||||||||||||||||   |||||||||||||||||||||| |||||||  |||||| ||||||| ||| | |||| | ||||||| ||||    
T  32763059 agatatttgcataacccccatggtacctcctatctccttttctttgcttttgttttttccccaattaaagtcttgttattttcttta-tgttttgaattt 32763157  T
Q  331 atacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnnggttgctagtgttctctatttttgtatcagttcttgaaatat 427  Q
    ||||  |||  ||||||    ||||||||||||||| || |||   |        ||||| ||||||| |||||||||| |||||||||||||||||    
T  32763158 atac--tagtgttttat----ctcaaattcatcagtgtttcaatgtcaaaactaaggttgttagtgttttctatttttggatcagttcttgaaatat 32763248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 28474719 - 28474968
Alignment:
Q  31 cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactga 130  Q
    ||||||||||| |  ||||| |||||||||||||| || ||||||||||||||  |||||||||||||||||||||||| |||| |||||||||||||||    
T  28474719 cttttgggaaatggagtcaatatttgctgcattggtcctaactcttctgagtccgagtatagttatgatatattggctaggtctcagatatgcaaactga 28474818  T
Q  131 aattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagct 230  Q
      ||||||||||||| ||||| ||||||| || || |||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  28474819 ctttacagtcttttgtgaagaacgtccaagaggttgctttagcaactccttcatcagagttgcttgtgattccatttggttcttccgaacctctcaagct 28474918  T
Q  231 agacatttgcataacccccatggtatgccctatctccttttctttgcttt 280  Q
    ||| ||||| |||||||||||||||   ||||||||||||||||||||||    
T  28474919 agatatttgtataacccccatggtacctcctatctccttttctttgcttt 28474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 32767733 - 32767971
Alignment:
Q  5 tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt 104  Q
    ||||||| || || |||| |||||| ||||| ||||| || ||| | |||||||||||||| || ||||| ||||||||  |||||||||||||||||||    
T  32767733 tatttattctcaataatagtactatacttttaggaaatgcagtctatatttgctgcattggtcctaactcctctgagtccgagtatagttatgatatatt 32767832  T
Q  105 ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca 204  Q
    ||||| |||| ||| |||||||||||||||||||||||||| ||| |  ||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  32767833 ggctaggtctcagacatgcaaactgaaattacagtcttttgtgaaaaatgtccagcagtttactttagcaactcttccatcagagctccttgtgattcca 32767932  T
Q  205 tttcgttcttctgaacctctcaagctagacatttgcata 243  Q
     || | ||||||||||| ||||||||||| |||||||||    
T  32767933 gttggctcttctgaaccactcaagctagaaatttgcata 32767971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 32739955 - 32740163
Alignment:
Q  37 ggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactgaaattac 136  Q
    ||||| || ||||| ||||||||| |||| ||| || ||||||||||  |||||||||| ||||||||||||| |||| ||||||| |||||||||||||    
T  32739955 ggaaatgctgtcaatatttgctgctttggtccagacgcttctgagtctgagtatagttacgatatattggctacgtctcagatatgtaaactgaaattac 32740054  T
Q  137 agtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacat 236  Q
    | |||||||| ||||  ||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||    
T  32740055 actcttttgccaagaatgtccaacagattactttagcaaatctttcatcaaagttccttgtgattccatttagttcttctgaacctctcaagttagaaat 32740154  T
Q  237 ttgcataac 245  Q
    |||||||||    
T  32740155 ttgcataac 32740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 52 - 286
Target Start/End: Original strand, 32858129 - 32858366
Alignment:
Q  52 atttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaaga 151  Q
    ||||| |||||||| || ||||||| ||| || |||||||||| |||||||| ||||| |||| ||||||||||| |||||||||||||||||| |||      
T  32858129 atttgttgcattggtcctaactcttgtgaatccaagtatagttctgatatatcggctaggtctcagatatgcaaattgaaattacagtcttttgtgaaat 32858228  T
Q  152 gcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctga---acctctcaagctagacatttgcataacccc 248  Q
     |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||   |||||  |||||||| ||||||||| ||||    
T  32858229 acgtccaacggtttactttagcaactctttcatcagagtgccttgtgattccatttggttcttttgaaccacctcataagctagatatttgcatagcccc 32858328  T
Q  249 catggtatgccctatctccttttctttgctttggtttt 286  Q
    |||||||   ||||||||||||||||| ||||| ||||    
T  32858329 catggtacctcctatctccttttcttttctttgctttt 32858366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 32652048 - 32651840
Alignment:
Q  35 tgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactgaaatt 134  Q
    ||||||| || ||||| |||||| ||||||| ||||||| ||  |||||  | |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  32652048 tgggaaatgcagtcaatatttgcggcattggtccaaacttttacgagtctgaatatagttatgatatattggctaggtctgagatgtgcaaactgaaatt 32651949  T
Q  135 acagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagctagac 234  Q
    |||||||||||  |||    ||||||   |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||     
T  32651948 acagtcttttggtaaggatttccaacgtgttacttcagcaaatctttcatcagagttccttgtgattccatttggttcttctgaacctctgaagctagaa 32651849  T
Q  235 atttgcata 243  Q
    |||||||||    
T  32651848 atttgcata 32651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 25469405 - 25469645
Alignment:
Q  2 aattatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatat 101  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||  ||||||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  25469405 aattatttatcctcaaaaatattactatgtttttgggaaacgcggtcaatgtttgctgcattggtccaaaatcttctgagtccaagtatagttataatat 25469504  T
Q  102 attggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgatt 201  Q
     || |||   ||| ||||  |  | |||||||| ||  ||||||||||||  ||||||| | |||||||   ||||||||||||| ||||||||||||||    
T  25469505 tttagcttgttctaagatgagtgagctgaaatttcacacttttgcgaagaatgtccaacgggttactttgaaaactctttcatcaaagttccttgtgatt 25469604  T
Q  202 ccatttcgttcttctgaacctctcaagctagacatttgcat 242  Q
    |||||| ||| ||||||||||||| || |||| ||||||||    
T  25469605 ccatttggtttttctgaacctctcgagatagaaatttgcat 25469645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 32656308 - 32656093
Alignment:
Q  30 gcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactg 129  Q
    |||||||||||| ||  |||| |||||||| ||||| ||||||||||  |||||  | | |||||| |||||||||| || |||| |||| |||||  ||    
T  32656308 gcttttgggaaatgctatcaatatttgctgtattggtccaaactctttcgagtctgaatgtagttacgatatattggttaggtctcagatgtgcaacttg 32656209  T
Q  130 aaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagc 229  Q
    |||||||||||||| |||||||  ||||||  | ||   |||||||||||||| || ||||| ||||||||||||||| |||||| |||| |||||||||    
T  32656208 aaattacagtctttcgcgaagaatgtccaatcggttgtattagcaactctttcgtcggagttgcttgtgattccatttggttcttttgaagctctcaagc 32656109  T
Q  230 tagacatttgcataac 245  Q
    |||| |||||||||||    
T  32656108 tagaaatttgcataac 32656093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 32662194 - 32662009
Alignment:
Q  31 cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactga 130  Q
    ||||||||||| ||  |||| |||||||| ||||| ||||||||||  |||||  | ||||| ||| |||||||||||| |||| |||| ||||||||||    
T  32662194 cttttgggaaatgctatcaatatttgctgtattggtccaaactctttcgagtctgaatatagatattatatattggctaggtctcagatgtgcaaactga 32662095  T
Q  131 aattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttct 216  Q
    |||| ||||||||||| |||   || ||||   || | || ||||||| ||| |||||||||||| ||||||||||| ||||||||    
T  32662094 aattgcagtcttttgcaaaggatgttcaacgtgttgcgttcgcaactccttcctcagagttccttttgattccatttggttcttct 32662009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 32710052 - 32710294
Alignment:
Q  35 tgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgcaaactgaaatt 134  Q
    ||||||| |||||||  ||| |||||||||| || |||| ||||||| |   ||||   |||||||||||||| | |||| | |||||||   |||| ||    
T  32710052 tgggaaatgcggtcagtattagctgcattggtcctaactattctgagccgtggtatcagtatgatatattggccaggtctcaaatatgcagtttgaagtt 32710151  T
Q  135 acagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca---------tttcgttcttctgaacctctc 225  Q
    |||||||||| ||||||  |||||||   ||| |||||||  ||||||||||  |||||| |||||||||         ||| |||||||||||| ||||    
T  32710152 acagtcttttccgaagaatgtccaacgcgttagtttagcagatctttcatcaacgttcctcgtgattccatttggtcattttggttcttctgaacttctc 32710251  T
Q  226 aagctagacatttgcataacccccatggtatgccctatctcct 268  Q
     ||||||| |||||||||||||||| ||||   ||||||||||    
T  32710252 gagctagaaatttgcataacccccaaggtacctcctatctcct 32710294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 25477501 - 25477573
Alignment:
Q  215 ctgaacctctcaagctagacatttgcataacccccatggtatgccctatctccttttctttgctttggttttt 287  Q
    |||||||||||||| |||| |||||||||||||||||||||   ||||| ||||||||||| ||||| |||||    
T  25477501 ctgaacctctcaagatagaaatttgcataacccccatggtacctcctatatccttttctttactttgtttttt 25477573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 545
Target Start/End: Complemental strand, 32651629 - 32651534
Alignment:
Q  453 tttgatcatgaacttcttttgtccctgttgtgctgtaataaattttgcaa----ttttgttttctttatgttgtttttatcattgattaatgcgttg 545  Q
    ||||||| |||| || |||| |||||||||| | || |||||||||||||    ||||||||||||||||||| ||| |||||||||| ||| ||||    
T  32651629 tttgatcttgaatttatttt-tccctgttgtaccgtcataaattttgcaaggggttttgttttctttatgttgctttaatcattgattgatgtgttg 32651534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 28475014 - 28475146
Alignment:
Q  319 tgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnn-ggttgctagtgttctctatttttgtatcagtt 417  Q
    ||||||| ||||||||  |||||||||||    ||||||||||||||||||  |||||||        ||||| ||||||| |||||||||| || ||||    
T  28475014 tgttttgaatttatactatagcattttat----ctcaaattcatcagtttttgaaatgccaaaactaaggttgttagtgttttctatttttggattagtt 28475109  T
Q  418 cttgaaatatttgtctcaaaatttctcttattgattt 454  Q
    |||||||| |  |||||||| ||||| ||| ||||||    
T  28475110 cttgaaatgtcagtctcaaattttcttttactgattt 28475146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 32768173 - 32768236
Alignment:
Q  433 tcaaaatttctcttattgattttgatcatgaacttcttttgtccctgttgtgctgtaataaatttt 498  Q
    ||||| ||||| |||||||||| |||||| || |||||||| || |||||||||||||||||||||    
T  32768173 tcaaattttcttttattgattt-gatcattaatttcttttg-ccatgttgtgctgtaataaatttt 32768236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 25477662 - 25477702
Alignment:
Q  505 ttgttttctttatgttgtttttatcattgattaatgcgttg 545  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  25477662 ttgttttctttctgttgcttttatcattgattaatgtgttg 25477702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 21524383 - 21524656
Alignment:
Q  5 tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt 104  Q
    ||||||| || || |||| |||||||  ||| ||||| || || || ||||| |||||||| |  ||||||| |||||| ||||||||||||||||||||    
T  21524383 tatttattctcaataatagtactatgagtttaggaaatgcagttaatatttgttgcattggtcataactcttttgagtccaagtatagttatgatatatt 21524482  T
Q  105 ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca 204  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||   | || ||| ||||||||||  ||||||||||| ||||| |||||||||||||    
T  21524483 ggctaggtctgagatatgcaaattgaaattacagtcttttgtgaaatacttctaacggtttactttattaactctttcatgagagtgccttgtgattcca 21524582  T
Q  205 tttcgttcttctga---acctctcaagctagacatttgcataacccccatggtatgccctatctccttttcttt 275  Q
    ||| |||||| |||   |||||  |||||||| |||||||||||||||||||||   |||||||||||||||||    
T  21524583 tttggttcttttgaaccacctcataagctagatatttgcataacccccatggtacctcctatctccttttcttt 21524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 2166655 - 2166603
Alignment:
Q  318 atgttttggatttatacactagcattttatttatctcaaattcatcagttttg 370  Q
    |||||||| |||||||| |||||||||| ||||||||||||||| ||||||||    
T  2166655 atgttttgaatttatactctagcattttttttatctcaaattcaccagttttg 2166603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 16756838 - 16757170
Alignment:
Q  24 tactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgc 123  Q
    |||||||||||||||||| || ||||| ||||| ||| |||| ||||   |||||| |||  |||||||||||||||||| ||||| |||| ||| ||||    
T  16756838 tactatgcttttgggaaatgcagtcaatatttgttgctttggtccaactgcttctgtgtccgagtatagttatgatatatcggctaggtctcagaaatgc 16756937  T
Q  124 aaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctc 223  Q
    |||||||||||||| || ||||| ||||   | || ||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  16756938 aaactgaaattacactcgtttgcaaagaatttgcatcaagttactttagcaactctttcatcagagttccttgtgattccaattggttcttctgaacctc 16757037  T
Q  224 tcaagctagacatttgcat---------aacccccatggtatgccctatctccttttctttgctttggttttttgtccaattgaagtcttattaatatct 314  Q
    || |||| |  ||||||||         |||||||| ||||   ||||| |||||||||||||||||  ||||| ||| ||| ||||||||||| |||||    
T  16757038 tcgagcttgtaatttgcataactcccacaacccccacggtaccacctatttccttttctttgctttg--tttttttcctattaaagtcttattattatct 16757135  T
Q  315 tgaatgttttggatttatacactagcattttattt 349  Q
    |  |||||||| |||||||| |||||| |||||||    
T  16757136 tttatgttttgaatttatactctagcaatttattt 16757170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 16752334 - 16752554
Alignment:
Q  25 actatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctgagatatgca 124  Q
    |||| ||||||||| || || ||||| ||||||||| |||| |||||  |||| |||||  |||||||||||| |||   ||| | |||| ||| |||||    
T  16752334 actacgcttttggggaatgcagtcaatatttgctgctttggtccaaatgcttccgagtccgagtatagttatggtatcaaggccaggtctcagagatgca 16752433  T
Q  125 aactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctct 224  Q
    ||||||||||||| |||||||  | ||  ||||||||| ||||||||| |||||||||| ||||||||||| ||||||||  | |||||||  |||||||    
T  16752434 aactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaacctct 16752533  T
Q  225 caagctagacatttgcataac 245  Q
    ||||||||| |||||||||||    
T  16752534 caagctagaaatttgcataac 16752554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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