View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11960_low_3 (Length: 568)

Name: NF11960_low_3
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11960_low_3
NF11960_low_3
[»] chr6 (2 HSPs)
chr6 (220-553)||(32450575-32450910)
chr6 (164-209)||(17352817-17352862)
[»] chr7 (6 HSPs)
chr7 (398-553)||(12932208-12932361)
chr7 (1-160)||(1553167-1553324)
chr7 (61-153)||(1537580-1537677)
chr7 (164-207)||(1545570-1545613)
chr7 (164-209)||(12469043-12469088)
chr7 (1-37)||(21402791-21402827)
[»] chr3 (4 HSPs)
chr3 (356-430)||(9103088-9103162)
chr3 (207-287)||(9103179-9103259)
chr3 (164-209)||(53589050-53589096)
chr3 (165-209)||(45279860-45279904)
[»] chr5 (3 HSPs)
chr5 (204-290)||(40687335-40687421)
chr5 (2-31)||(2148633-2148662)
chr5 (1-37)||(6167283-6167319)
[»] chr4 (4 HSPs)
chr4 (437-553)||(52016446-52016562)
chr4 (164-209)||(16647168-16647213)
chr4 (2-37)||(46933415-46933450)
chr4 (164-209)||(24924987-24925032)
[»] chr8 (5 HSPs)
chr8 (164-209)||(22454653-22454698)
chr8 (164-209)||(32352298-32352343)
chr8 (164-209)||(32368959-32369004)
chr8 (2-34)||(9735777-9735809)
chr8 (1-33)||(43875213-43875245)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 220 - 553
Target Start/End: Original strand, 32450575 - 32450910
Alignment:
Q  220 ctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaagatatgtgccaaaagggtgtcgaaagaatgctct 319  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  32450575 ctaacgtgctgtaaaagaaacagggcatggagatttgcttctgatcttaggaaaattctactgcaagatatgtgccaaaagggtgtcgaaggaatgctct 32450674  T
Q  320 aaacttagaaaataagtctggattaacaagtgattaag--tgaggctgagaattgatgaggatgttgaagtaatagcaagaatatatgtgagcattttat 417  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32450675 aaacttagaaaataagtttggattaacaagtgattaagagtgaggctgagaattgatgaggatattgaagtaatagcaagaatatatgtgagcattttat 32450774  T
Q  418 gaaccactaattgtttaccacaattgaaatttaaatggggagtcaagagagtaatgaggaattcaacattctttatttttgggtcaaggtaataaagtgg 517  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450775 gaaccactaattgtttaccacaattgaaatttaaaaggggaatcaggacagtaatgaggaattcaacattctttatttttgggtcaaggtaataaagtgg 32450874  T
Q  518 aattattgttgataattccttgaagaccaaagatgt 553  Q
    ||||||||||||||||||||||||||||||||||||    
T  32450875 aattattgttgataattccttgaagaccaaagatgt 32450910  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 17352817 - 17352862
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    ||||||||||||||||||||||| |||| | | |||||||||||||    
T  17352817 ctataagtgatttgcgaccctttttccttagggaaaactactatat 17352862  T

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Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 398 - 553
Target Start/End: Original strand, 12932208 - 12932361
Alignment:
Q  398 aatatatgtgagcattttatgaaccactaattgtttaccacaattgaaatttaaatggggagtcaagagagtaatgaggaattcaacattctttattttt 497  Q
    |||||||||||||||||||||| ||||||| |||| || | |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  12932208 aatatatgtgagcattttatga-ccactaaatgttaacaa-aattgaaatttaaatggggaatcaatagagtaatgagggattcaacattctttattttt 12932305  T
Q  498 gggtcaaggtaataaagtggaattattgttgataattccttgaagaccaaagatgt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12932306 gggtcaaggtaataaagtggaattattgttgataattccttgaagaccaaagatgt 12932361  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 1553324 - 1553167
Alignment:
Q  1 gctagagctcgcacattttaaatgtgaagaagtgaggcgttagggggcatttaaaagagtgtacattacacttatataaaataattatgaatgattatga 100  Q
    |||| ||||| |||| |||||||||||| ||||||||  ||| |||  | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1553324 gctaaagctcacacaatttaaatgtgaaaaagtgaggtattaagggt-acttaaaagagtgtccattacacttatataaaataattatgaatgattatga 1553226  T
Q  101 caatgaaattaagtaaaatgcattgaactcaaaaaagataataaatttaggtaggttgaa 160  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  1553225 caatgaaattaagtaaaatgcattgaactc-aaaaggataataaattcaggtaggttgaa 1553167  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 1537580 - 1537677
Alignment:
Q  61 gtacattacacttatataaaa-taattatgaatgattatgacaatgaaat----taagtaaaatgcattgaactcaaaaaagataataaatttaggta 153  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||    || |||||||||||||||||||||||  |||||||||| |||||    
T  1537580 gtacattacacttatataaaaataattatgaattattatgacaatgaaattgtatatgtaaaatgcattgaactcaaaaattataataaattcaggta 1537677  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 1545613 - 1545570
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1545613 ctataagtgatttgcgaccctttatcctaatgaaaaactactat 1545570  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 12469043 - 12469088
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    |||||||||||||||||||| || |||| |||||||||||||||||    
T  12469043 ctataagtgatttgcgacccattttccttatgaaaaactactatat 12469088  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21402791 - 21402827
Alignment:
Q  1 gctagagctcgcacattttaaatgtgaagaagtgagg 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  21402791 gctagagctcacacattttaaatgtggagaagtgagg 21402827  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 9103162 - 9103088
Alignment:
Q  356 agtgaggctgagaattgatgaggatgttgaagtaatagcaagaatatatgtgagcattttatgaaccactaattg 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9103162 agtgaggctgagaattgatgaggatgttgaagtaatagcaagaatatatgtgagcattttatgaaccactaattg 9103088  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 9103259 - 9103179
Alignment:
Q  207 tatcttgacatacctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaaga 287  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  9103259 tatcttgacatacccaacgtgctgtaaaagaaacagggcatggagatttgcttctggtcttaggaaaattctgctgcaaga 9103179  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 53589096 - 53589050
Alignment:
Q  164 ctataagtgatttgcgaccctttat-cctaatgaaaaactactatat 209  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||    
T  53589096 ctataagtgatttgcgaccattttttcctaatgaaaaactactatat 53589050  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 45279904 - 45279860
Alignment:
Q  165 tataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    ||||||||||||| |||||||| | || |||||||||||||||||    
T  45279904 tataagtgatttgtgacccttttttcttatgaaaaactactatat 45279860  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 40687421 - 40687335
Alignment:
Q  204 ctatatcttgacatacctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaagatat 290  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||| ||||||||||||||||||| |||| |||||    
T  40687421 ctatatcttgacatacctaacgtgatgtaaaaggaatagggcacggagatttgcttctggtcttaggaaaattctgatgcatgatat 40687335  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 2148662 - 2148633
Alignment:
Q  2 ctagagctcgcacattttaaatgtgaagaa 31  Q
    ||||||||||||||||||||||||||||||    
T  2148662 ctagagctcgcacattttaaatgtgaagaa 2148633  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6167319 - 6167283
Alignment:
Q  1 gctagagctcgcacattttaaatgtgaagaagtgagg 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  6167319 gctagagctcacacattttaaatgtggagaagtgagg 6167283  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 553
Target Start/End: Complemental strand, 52016562 - 52016446
Alignment:
Q  437 acaattgaaatttaaatggggagtcaagagagtaatgaggaattcaacattctttatttttgggtcaaggtaataaagtggaattattgttgataattcc 536  Q
    ||||||| |||||||||| |||   ||||||||| ||||||||||  ||||| | |||||||||| |||||||| |||| |||||| || |||| |||||    
T  52016562 acaattggaatttaaatgaggatcaaagagagtactgaggaattcggcattcctcatttttgggttaaggtaatcaagttgaattactgatgatgattcc 52016463  T
Q  537 ttgaagaccaaagatgt 553  Q
    |||||||| ||||||||    
T  52016462 ttgaagactaaagatgt 52016446  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 16647168 - 16647213
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    ||||||||||||||||||||||| | || |||||||||||||||||    
T  16647168 ctataagtgatttgcgacccttttttcttatgaaaaactactatat 16647213  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 46933415 - 46933450
Alignment:
Q  2 ctagagctcgcacattttaaatgtgaagaagtgagg 37  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46933415 ctagagctcacacattttaaatgtgaagaagtgagg 46933450  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 24924987 - 24925032
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    ||||||||||||||||| ||||| | | ||||||||||||||||||    
T  24924987 ctataagtgatttgcgaaccttttttcaaatgaaaaactactatat 24925032  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 22454698 - 22454653
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  22454698 ctataagtgatttgcgacccatttttcttatgaaaaactactatat 22454653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 32352298 - 32352343
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  32352298 ctataagtgatttgcgacccgtttttcttatgaaaaactactatat 32352343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 32368959 - 32369004
Alignment:
Q  164 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 209  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  32368959 ctataagtgatttgcgacccgtttttcttatgaaaaactactatat 32369004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 9735809 - 9735777
Alignment:
Q  2 ctagagctcgcacattttaaatgtgaagaagtg 34  Q
    ||||||||| |||||||||||||||||||||||    
T  9735809 ctagagctcacacattttaaatgtgaagaagtg 9735777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43875213 - 43875245
Alignment:
Q  1 gctagagctcgcacattttaaatgtgaagaagt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  43875213 gctagagctcgcacattttaaatgtggagaagt 43875245  T

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