View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11960_low_4 (Length: 561)

Name: NF11960_low_4
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11960_low_4
NF11960_low_4
[»] chr1 (2 HSPs)
chr1 (13-543)||(50964836-50965366)
chr1 (227-456)||(50980374-50980602)
[»] chr4 (1 HSPs)
chr4 (240-451)||(13641257-13641467)
[»] scaffold0188 (1 HSPs)
scaffold0188 (269-437)||(11664-11832)


Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Complemental strand, 50965366 - 50964836
Alignment:
Q  13 agatgaaccagggtgaacacagtgtgttactggagttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtcgtgtgatgaatagttgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50965366 agatgaaccagggtgaacacagtgtgttactggagttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtagtgtgatgaatagttgat 50965267  T
Q  113 gcatgtggagtacaactccaaattgttagcatagaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965266 gcatgtggagtacaactccaaattgttagcatagaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttg 50965167  T
Q  213 ttaagtgaccaaaagcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50965166 ttaagtgaccaaaagcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaa 50965067  T
Q  313 gaacagaacacatgctcactataactatcacagaaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  50965066 gaacagaacacatgctcactataactatcacagaaatcaaaatggttattctgatgaggttgattccaattggttttttaacagattttggcacccagtt 50964967  T
Q  413 gatgattccacatctcatgtttccctttcacacattgatttactaaccacactatatataagccatatgttgtcaccaaagaannnnnnnnnnctagaat 512  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||          || ||||    
T  50964966 gatgattccacatctcatgtttccctttaacacattgatttactaaccacactatatataagccatacgttgtcaccaaagaattttttttttcttgaat 50964867  T
Q  513 tagcttactattagattttttatattatcat 543  Q
    |||||||||||||||||||||||||||||||    
T  50964866 tagcttactattagattttttatattatcat 50964836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 227 - 456
Target Start/End: Complemental strand, 50980602 - 50980374
Alignment:
Q  227 gcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg 326  Q
    |||| |||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50980602 gcatggaaaccaacatgacagaaccacagccagagtac-tcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg 50980504  T
Q  327 ctcactataactatcacagaaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagctgatgattccacatc 426  Q
    ||||||||| ||  |||||||||||| |||||||||| | ||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||  |    
T  50980503 ctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcatccagttgatgattccaccgc 50980404  T
Q  427 tcatgtttccctttcacacattgatttact 456  Q
    |||||||| || || | |||||||||||||    
T  50980403 tcatgttttccattgatacattgatttact 50980374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 240 - 451
Target Start/End: Original strand, 13641257 - 13641467
Alignment:
Q  240 catgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataacta 339  Q
    |||| ||||||||||  |||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||     
T  13641257 catgacagaaccacaaccagagtac-tcagcatacagagaggccagctttggacatgccatttttgacataaagaacagaacacatgctcactacagctg 13641355  T
Q  340 tcacagaaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagctgatgattccacatctcatgtttccctt 439  Q
     || || |||||| ||||||| |||| ||||||||||||  ||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||| |    
T  13641356 gcataggaatcaagatggttactctgttgaggctgattctcattggttcttcaacagattttggcacccagttgatgattccacaactcatgtttcccat 13641455  T
Q  440 tcacacattgat 451  Q
    | |||| |||||    
T  13641456 taacacgttgat 13641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 269 - 437
Target Start/End: Original strand, 11664 - 11832
Alignment:
Q  269 gcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataactatcacagaaatcaaaatggttattctgatg 368  Q
    ||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| |||||| ||  || ||||||||| ||||| || ||| |     
T  11664 gcatttagagaagccagctttggacatgcaatttttgacataaagaataggacacatgcttactatagctggcatagaaatcaagatggtgatgctgtta 11763  T
Q  369 aggctgattccaattggttttttaacagattttggcacccagctgatgattccacatctcatgtttccc 437  Q
    ||  |||||||  ||||||||| |||||||||||| |||| | ||||||||||| | |||||| |||||    
T  11764 agagtgattccctttggtttttcaacagattttggaacccggttgatgattccaaacctcatggttccc 11832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University