View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11960_low_5 (Length: 534)
Name: NF11960_low_5
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11960_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Original strand, 27583861 - 27584364
Alignment:
| Q |
15 |
atatatagagcacctcaacatagtttttcttcaatccttcctcataaataaataattaaatttattttatctctcttttcaatatggctcaagagcttga |
114 |
Q |
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| T |
27583861 |
atatatagagcacctcaacatagtttttcttcaatccttcctcataaataaataattaaatttattttatctctcttttcaatatggctcaagagcttga |
27583960 |
T |
|
| Q |
115 |
gaacaagttggaagaagagcaagtaaggtccataggagagttacagaagctgagcatcttcccctcaccttggtgacagccattttcctaacaggtctga |
214 |
Q |
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| T |
27583961 |
gaacaagttggaagaagagcaagtgaggtccataggagagttacagaagctgagcatcttcc--tcaccttggtgacagccattttcctaacaggcatga |
27584058 |
T |
|
| Q |
215 |
ttacaataacatcatcgtcagcaacatcagcggtagatgcaagagacagtctatattccatgatgttctcttttgggatcttcctccacttaacttttat |
314 |
Q |
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| T |
27584059 |
ttacaataacatcatcatcagcaacatcagcggtagatgcaagagacagtctatattccatgatgttttcttttgggatcttcctccacttaacttttgt |
27584158 |
T |
|
| Q |
315 |
gtccttcagcttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcatatggacttctttctggatcctttcttctatttcat |
414 |
Q |
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| T |
27584159 |
gtccttcagcttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcatatggacttctttctggctcctttcttctatttcat |
27584258 |
T |
|
| Q |
415 |
tcccttcatacactacttagcatcatacttgttggtggtggtaccaactcctatctttcgcttcttacattcactatgatacttgttttatgctttgtta |
514 |
Q |
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| T |
27584259 |
tcccttcatacactacttagcatcataattgttggtggtggtaccaactcctatctttcgcttcttacattcactatgatacttgttttatgctttgtta |
27584358 |
T |
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| Q |
515 |
tcattg |
520 |
Q |
| |
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|||||| |
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| T |
27584359 |
tcattg |
27584364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 80 - 512
Target Start/End: Original strand, 27597777 - 27598184
Alignment:
| Q |
80 |
tttatctctcttttcaatatggctcaagagcttgagaacaagttggaagaagagcaagtaaggtccataggagagttacagaagctgagcatcttcccct |
179 |
Q |
| |
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||||||||||| |||||| |||||| |||||||||||||| || |||||||| ||||| |||||||| | |||||| ||||||||||||||| ||| | |
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| T |
27597777 |
tttatctctctcttcaat--ggctcatgagcttgagaacaaattagaagaagaccaagtgaggtccatggaagagttgcagaagctgagcatcctcc--t |
27597872 |
T |
|
| Q |
180 |
caccttggtgacagccattttcctaacaggtctgattacaataacatcatcgtcagcaacatcagcggtagatgcaagagacagtctatattccatgatg |
279 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27597873 |
caccttggtgacagccattttcctaacaggcctgattataataacatcatc---agcaacatcagcagtagatgcaagacacagtctatattccatgatg |
27597969 |
T |
|
| Q |
280 |
ttctcttttgggatcttcctccacttaacttttatgtccttcagcttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcat |
379 |
Q |
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| T |
27597970 |
gcctcttttgtgtttttcctttgcttaactttcatgtccttcagcttacgcttctccctgtttc------gcatgaccattacttcatgtgtcat----- |
27598058 |
T |
|
| Q |
380 |
atggacttctttctggatcctttcttctatttcattcccttcatacactacttagcatcatacttgttggtggtggtaccaactcctatctttcgcttct |
479 |
Q |
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|| ||||| ||||| ||||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||| | |||| || || |
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| T |
27598059 |
-tgtacttcaatctggctcctttcttctgcttctatcccttcacacactacttagcatcattct------tggtggtaccaactcctctttttccctcct |
27598151 |
T |
|
| Q |
480 |
tacattcactatgatacttgttttatgctttgt |
512 |
Q |
| |
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| | |||||||| || |||||||||||||||| |
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| T |
27598152 |
tctactcactatgctatttgttttatgctttgt |
27598184 |
T |
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