View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11960_low_6 (Length: 464)
Name: NF11960_low_6
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11960_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 216 - 454
Target Start/End: Original strand, 2450218 - 2450457
Alignment:
| Q |
216 |
cagagtaaatcatgaagcttatgacagaaagtgacgagatatgaggactcgaaattgttgattagtaacaagttcctcaattttgcgt-gatttgttctc |
314 |
Q |
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| T |
2450218 |
cagagaaaatcatgaagcttatgacagaaagtgtcaagatatgaggactcggaattgttgattagtaaaaagttcctcaattagacattgctttgttctc |
2450317 |
T |
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| Q |
315 |
acttctcttccaagttcattcctttcatccatcacaattttcacagctttgtatacactttctttgtgaacaagccatattcttgttcacctttctctac |
414 |
Q |
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| T |
2450318 |
acttcttttccaacttcattcctttcatccatcacaattttcacagctttgtctacactttctttgtgaacaagccatattcttcttcacctttctctac |
2450417 |
T |
|
| Q |
415 |
ttccacattaaccttcaactttgtattcatgctacctttg |
454 |
Q |
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| T |
2450418 |
ctccacattaaccttcaactttgtattcatgcaacctttg |
2450457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 2449970 - 2450167
Alignment:
| Q |
18 |
gaccattgttttatggtaaataaaaatttaggcaagttgggttatggggactcgccagggccaatgaaagaatcaaggcgcagaaagtgctaacagattt |
117 |
Q |
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| T |
2449970 |
gacctttgttttatgataaataaaaatttaggcgagctgggttaaagggactcaccagggccaatgaaagaatcaaggcacataaagtgccgacagagat |
2450069 |
T |
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| Q |
118 |
actctcgactttgctgtcaaaggctatgctatgcatgcgatagtaaaagttcacgacacgagctcacaacataatagttacataatggcgtgcgatga |
215 |
Q |
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| T |
2450070 |
actcttgactttactgtcaaaggctatgctatgcatgcgatagtaaaagttcatgacacgagctcacaaaataatagttatataatgacgtgtgatga |
2450167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 436
Target Start/End: Complemental strand, 35027431 - 35027300
Alignment:
| Q |
303 |
tgatttgttctcacttctcttccaagttcattcctttcatccatcacaattttcacagctttgtatacactttc-tttgtgaacaagccatattcttgtt |
401 |
Q |
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|||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||| | |||||||| ||||| ||||| ||| |||| | |
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| T |
35027431 |
tgattttttctcacttctcttccaactttattctcatcatccatcacaattttcacagcttcacacacactttcttttgtaaacaaccca---tcttcat |
35027335 |
T |
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| Q |
402 |
cacctttctctacttccacattaaccttcaacttt |
436 |
Q |
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| T |
35027334 |
cacctttctcaacttccacaccaaccttcatcttt |
35027300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 421
Target Start/End: Complemental strand, 35034487 - 35034324
Alignment:
| Q |
256 |
atgaggactcgaaattgttgattagtaacaagttcctcaattttgcgtgatttgttctcacttctcttccaagttcattcctttcatccatcacaatttt |
355 |
Q |
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| T |
35034487 |
atgatgactctaaattgttgctgaggaggaagtttctcatttttgcatgatttgctctcacttctcttccaatctcattctcgtcatccattacaatttt |
35034388 |
T |
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| Q |
356 |
cacagctttgtatacactttc-tttgtgaacaagccatattcttgttcacctttctctacttccaca |
421 |
Q |
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| T |
35034387 |
tgcagctttgcacacactttcttttgtaaacaaccca---tcttcatcacctttctcaacttccaca |
35034324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 35030225 - 35030109
Alignment:
| Q |
303 |
tgatttgttctcacttctcttccaagttcattcctttcatccatcacaattttcacagctttgtatacactttc-tttgtgaacaagccatattcttgtt |
401 |
Q |
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| T |
35030225 |
tgatttttcctcacttctcttccaacctcattcccttcatgcatcacaatcttcacagctttgcacacattttcttttgtaaacaaccca---tcttcat |
35030129 |
T |
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| Q |
402 |
cacctttctctacttccaca |
421 |
Q |
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| T |
35030128 |
cacctttctcaacttccaca |
35030109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 35011230 - 35011324
Alignment:
| Q |
339 |
tcatccatcacaattttcacagctttgtatacactttc-tttgtgaacaagccatattcttgttcacctttctctacttccacattaaccttcaactt |
435 |
Q |
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| T |
35011230 |
tcatccatcacaatcttcacagctttgcacacactttcttttgtaaacaaccca---tcttcttcacctttctcaacttccacaccaacctttaactt |
35011324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 34997778 - 34997872
Alignment:
| Q |
285 |
aagttcctcaattttgcgtgatttgttctcacttctcttccaagttcattcctttcatccatcacaattttcacagctttgtatacactttcttt |
379 |
Q |
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| T |
34997778 |
aagtttctcagtttagcatgattagctctcacttcccttccaacctcattctcatcatccatcacaatcttcacagctttgcacacactttcttt |
34997872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 35018202 - 35018296
Alignment:
| Q |
285 |
aagttcctcaattttgcgtgatttgttctcacttctcttccaagttcattcctttcatccatcacaattttcacagctttgtatacactttcttt |
379 |
Q |
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| T |
35018202 |
aagtttctcattttggcatgatttgctcttacttcttttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttt |
35018296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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