View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11960_low_7 (Length: 413)
Name: NF11960_low_7
Description: NF11960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11960_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 174 - 395
Target Start/End: Complemental strand, 11624891 - 11624670
Alignment:
| Q |
174 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggc |
273 |
Q |
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| T |
11624891 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttctgcaaggc |
11624792 |
T |
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| Q |
274 |
gtgtcaaagatattggactgcaggcggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcacattatcgccac |
373 |
Q |
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| T |
11624791 |
gtgtcaaagatattggactgcaggtggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcgcattatcgccac |
11624692 |
T |
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| Q |
374 |
atcaccatctctgaggctcttg |
395 |
Q |
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| T |
11624691 |
atcaccatctctgaggctcttg |
11624670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 11625046 - 11624964
Alignment:
| Q |
13 |
agcagagatcaagaacaacaacaattcagcagcaacattaccggagggtattcagaacccaaaaacaccttccatagatgaagaaactt |
101 |
Q |
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| T |
11625046 |
agcagagatcaagaacaacaacaattcagcagcaacattaccggagggt------aacccaaaaacaccttccatagatgaagaaactt |
11624964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 31771803 - 31771910
Alignment:
| Q |
211 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
310 |
Q |
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| T |
31771803 |
ggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgaga |
31771902 |
T |
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| Q |
311 |
aatgttcc |
318 |
Q |
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| T |
31771903 |
aatgttcc |
31771910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 2823621 - 2823737
Alignment:
| Q |
211 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
310 |
Q |
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| T |
2823621 |
ggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgaga |
2823720 |
T |
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| Q |
311 |
aatgttccggtgggtgc |
327 |
Q |
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| T |
2823721 |
aacgtaccggtaggtgc |
2823737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 305
Target Start/End: Original strand, 18193381 - 18193495
Alignment:
| Q |
191 |
tgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattgga |
290 |
Q |
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| T |
18193381 |
tgtccaagatgcaaaagcgtagacacaaaattttgttactacaataattacaacgccaaccagccccgacacttctgcaaaaactgtcagagatattgga |
18193480 |
T |
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| Q |
291 |
ctgcaggcggaacca |
305 |
Q |
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|||| || ||||||| |
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| T |
18193481 |
ctgccggaggaacca |
18193495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 18188160 - 18188204
Alignment:
| Q |
211 |
ggacacaaagttctgttactacaataattacaacgtcaatcagcc |
255 |
Q |
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| T |
18188160 |
ggacacaaaattttgttactacaataattacaacgccaaccagcc |
18188204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 3775596 - 3775700
Alignment:
| Q |
211 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
310 |
Q |
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| T |
3775596 |
ggacaccaaattctgctactacaataactacaatgttaaccaacctcgccatttttgcaagaaatgccagagatactggactgccgggggagccatgaga |
3775695 |
T |
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| Q |
311 |
aatgt |
315 |
Q |
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||||| |
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| T |
3775696 |
aatgt |
3775700 |
T |
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