View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_high_16 (Length: 301)
Name: NF11961_high_16
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 5674658 - 5674374
Alignment:
| Q |
1 |
caaagtgaatgcatgtgtctctgtttctgaccaattcaggcaccatggacgacgcaccctggctcccccatttgataatactcttttccacaccaaattt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5674658 |
caaaatgaatgcatgtgtctctgtttctgaccaattcaggcaccatggacgacgcaccccggctcccccatttgataatactcttttccacaccaaattt |
5674559 |
T |
|
| Q |
101 |
tctctagttggcaacgatggcgaaacatttacgtgaagacaataacttttgatggcgtgagactttcccaaagccttcccaacaatttccttccttcgga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5674558 |
tctctagttggcaacgatggcgaaacatttacatgaagacaataacttttgatggcgtgagactttcccaaagccttcccaacaatttccttccttcgga |
5674459 |
T |
|
| Q |
201 |
tcccacactagaaagcagagaaaacttggacgaaaggaattgataaacgaaagtttaccgaaaatcaaactttcaacatttgatgt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5674458 |
tcccacactagaaagcagagaaaacttggacgaaaggaattgataaac-aaagtttaccgaaaatcaaactttcaacatttgatgt |
5674374 |
T |
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