View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_high_19 (Length: 222)
Name: NF11961_high_19
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 6132361 - 6132172
Alignment:
| Q |
20 |
gctactcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatct |
119 |
Q |
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| T |
6132361 |
gctactcgcgccacattaacaatactttcgaccactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcgatct |
6132262 |
T |
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| Q |
120 |
ctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactctctgct |
209 |
Q |
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| T |
6132261 |
ctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactctttgct |
6132172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 6135987 - 6135842
Alignment:
| Q |
45 |
tttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctctttcagaatgagtttgtaagcttc |
144 |
Q |
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| T |
6135987 |
tttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcataattatccaattatcgtcaatctctttcaaaatgagtctataagc--- |
6135891 |
T |
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| Q |
145 |
ctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaac |
195 |
Q |
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| T |
6135890 |
--ctattcacatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 34459673 - 34459850
Alignment:
| Q |
24 |
ctcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctcttt |
123 |
Q |
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| T |
34459673 |
ctcgcgcaaaattaagaatacattcaagcactggccttggaatgtggtgtaattttaggcactcttcattcataactctccataaatcttcaatctcctt |
34459772 |
T |
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| Q |
124 |
cagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcac |
201 |
Q |
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| T |
34459773 |
gagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcac |
34459850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 34448439 - 34448620
Alignment:
| Q |
23 |
actcgcgccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctctt |
122 |
Q |
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| T |
34448439 |
actcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttcct |
34448538 |
T |
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| Q |
123 |
tcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactct |
204 |
Q |
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| T |
34448539 |
tgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactct |
34448620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 34473717 - 34473889
Alignment:
| Q |
29 |
gccacattaacaatactttcgagcactgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcaatctctttcagaa |
128 |
Q |
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| T |
34473717 |
gccacattaagaatacattcaagcacagggttggggatgtagtctaacttgaggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaa |
34473816 |
T |
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| Q |
129 |
tgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcac |
201 |
Q |
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| T |
34473817 |
tgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattcaactgctgcagcaacatgcac |
34473889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 34483857 - 34483900
Alignment:
| Q |
77 |
ttgagacactcttcattcataactatccaataatcttcaatctc |
120 |
Q |
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| T |
34483857 |
ttgaggcactcttcattcataattatccaataatcttcaatctc |
34483900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 1593281 - 1593352
Alignment:
| Q |
128 |
atgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgc |
199 |
Q |
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| T |
1593281 |
atgagtttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgc |
1593352 |
T |
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