View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11961_high_2 (Length: 781)
Name: NF11961_high_2
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 698; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 4 - 769
Target Start/End: Complemental strand, 7971047 - 7970280
Alignment:
| Q |
4 |
ggagaagcagagatagatgcataacaaatgaggtctagtagtgaagagcatgatcatatgatgaataagtggttaaaatacagatagtgatactattcta |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971047 |
ggagaaacagagatagatgcataacaaatgaggtctagtagtgaagagcatgatcatatgatgaataagtggttaaaatacagatagtgatactattcta |
7970948 |
T |
|
| Q |
104 |
cgaatcacttttaattattttaaacgcttagatgagttttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttacaatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7970947 |
cgaatcacttttaattattttaaacgcttagatgagttttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagtgacaatg |
7970848 |
T |
|
| Q |
204 |
atctctcatatgagcttttatatgtgtatgttatatgaacctgtattgtttctctaaactttggtattgtggccatattgctatcatctataccgctata |
303 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7970847 |
acctctcatatgagcttttatatgtgtatgttat--gaacctgtattgtttctctaaactttggtattgtggccatattgctaccatctataccgctata |
7970750 |
T |
|
| Q |
304 |
gcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970749 |
gcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcat |
7970650 |
T |
|
| Q |
404 |
gatctgctaacaagccttacataaaatctctt----tattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagt |
499 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7970649 |
ggtctgctaacaagccttacataaaatctcttactttattttattatagaaaatggttcaaagtctaatttgatgattttcgtttttgttgcaattcagt |
7970550 |
T |
|
| Q |
500 |
gtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7970549 |
gtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcattgcacattagctcaaaacgttgtatagccat |
7970450 |
T |
|
| Q |
600 |
tgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaa |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7970449 |
tgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacaccggaaataggaagcatgaagaagaa |
7970350 |
T |
|
| Q |
700 |
tgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
7970349 |
tgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgcgtcatcagaagtgttgtcca |
7970280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 345 - 767
Target Start/End: Original strand, 37576392 - 37576829
Alignment:
| Q |
345 |
attttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagccttacataaaat-ctctt------- |
435 |
Q |
| |
|
||||| ||||||||||| |||||||||| || || ||||||||||||||||||||||||| | ||||||||||||||||| | ||| ||||| |
|
|
| T |
37576392 |
attttgagaagaataaactaagaatgattagatttatgttggttatacttttgattgcataacttgctaacaagccttacaaagaattctcttattttat |
37576491 |
T |
|
| Q |
436 |
------tattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacct |
529 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
37576492 |
ttattttattttattttagcaggtggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatattgcttgctctacct |
37576591 |
T |
|
| Q |
530 |
gctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtc |
629 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
37576592 |
gctatcctaaacttaggaacacgtgtcccaagtgctcattgcgcattagctcaaaacgttgtaaagccattgagaatctattgctatctattgaattgtc |
37576691 |
T |
|
| Q |
630 |
atgtctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctt |
729 |
Q |
| |
|
|||| |||||||||| | ||||||| |||||||||||||||| |||||| | ||| ||||||||| |||||||| ||| || |||||||| || || |
|
|
| T |
37576692 |
atgttcgaatgcaaaatacggttgcagagagaaaataagttacattggaaagatgaaccatgaagaacaatgcatccatgagccgtgttactgccctctg |
37576791 |
T |
|
| Q |
730 |
tcaggttgtgactttgttgcgtcgtcagaagtgatgtc |
767 |
Q |
| |
|
||| ||||||||||||||| || ||||||||| |||| |
|
|
| T |
37576792 |
ccagattgtgactttgttgcatcatcagaagtgttgtc |
37576829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 37576162 - 37576200
Alignment:
| Q |
13 |
gagatagatgcataacaaatgaggtctagtagtgaagag |
51 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
37576162 |
gagaaagatgcataacaaatgatgtctagtagtgaagag |
37576200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 322 - 769
Target Start/End: Original strand, 17582762 - 17583212
Alignment:
| Q |
322 |
gcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagcct |
420 |
Q |
| |
|
||||||||| |||||||||| | |||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
17582762 |
gcaatccgtcattgagtacatagcttttgtgaagaataaattgagaatgattagctttatgttggttatacttttgattgcataatttgctaacaagcct |
17582861 |
T |
|
| Q |
421 |
tacata-aaatctctttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattc-----agtgtgataatggtcata |
514 |
Q |
| |
|
|||| | |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
17582862 |
tacaaataaatct-tttattttattctaacaaatggttcaaagtctaatttgatgattttctttgatgttgcaataccttgcagtgtgataatgatcata |
17582960 |
T |
|
| Q |
515 |
tcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgca |
614 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17582961 |
ttgtttgctctacttgctgtactaaacttaggaacaagtgtcacgagtgctcattgcgcattagctcaaaacgttgtaaagtcattgagaatctattgct |
17583060 |
T |
|
| Q |
615 |
atctatcgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtacca |
714 |
Q |
| |
|
||||||| |||| |||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
17583061 |
atctatcaaaatttcatatccaaatgcaaaacatggttgcaaggcgaaaataagttacactg---ataggaagcatgaagaaaaatgcatctacgtacca |
17583157 |
T |
|
| Q |
715 |
tgttactgtcccctttcaggttgtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
||| |||| ||||||||||| |||||||||| ||| ||||||||| || |||||| |
|
|
| T |
17583158 |
tgtgactgccccctttcaggatgtgactttgctgcatcgtcagaattgttgtcca |
17583212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 291 - 769
Target Start/End: Original strand, 17590628 - 17591119
Alignment:
| Q |
291 |
ctataccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagct-tatgttggttat |
389 |
Q |
| |
|
||||||| ||||||| |||| || || ||| ||||||||| |||||||||| |||||| |||||||||||| |||||||| |||| ||||||| |||| |
|
|
| T |
17590628 |
ctataccactatagcgttttcggggcgagccgcaatccgtaattgagtacatagattttgtgaagaataaattgagaatgattagctgtatgttgattat |
17590727 |
T |
|
| Q |
390 |
acttttgattgcatgatctgctaacaagccttacata-aaatctctt---------tattttattatagaaaatggttcaaagtctaatttgatgatttt |
479 |
Q |
| |
|
||||||| |||||| | ||||||||||||| ||| | ||||||||| ||||||||| || |||| | ||||||||||||||||||||||| |
|
|
| T |
17590728 |
acttttggttgcataacttgctaacaagcctcacaaagaaatctcttattttattatattttattctaacaaatcgatcaaagtctaatttgatgatttt |
17590827 |
T |
|
| Q |
480 |
cttttttgttgcaattc-----agtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcaca |
574 |
Q |
| |
|
||||| || ||| || | ||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
17590828 |
cttttgtgctgcgataccttgtagtgtgataatggtcatattgtttgctctacctgctgtacgaaacttaagaacaagtgtcacgagtgctcattgcaca |
17590927 |
T |
|
| Q |
575 |
ttagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacac |
674 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
17590928 |
ttagctcaaaacgttgcaaagccattgagaatctattgctatctatcaaaatgtcatgttcgaatgcaaagcatggttgtaaggagaagataagttacac |
17591027 |
T |
|
| Q |
675 |
tggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||| |||||||||| ||| || ||||||||| |||||| |
|
|
| T |
17591028 |
cg---ataggaagcatgaagaagaatgcgtctacgtactatgttactgccccctttcaggatgtgactttgctgcatcatcagaagtgttgtcca |
17591119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 17590343 - 17590524
Alignment:
| Q |
18 |
agatgcataacaaatgaggtctagtagtgaagagcatgatcata----tgatgaataagtggttaaaatacagatagtgatactattctacgaatcactt |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| | ||||||||| ||||| | || |||| | |
|
|
| T |
17590343 |
agatgcaaaacaaatgaggtctagtagtgaagtaagtgagcatgacgttgatgaataagtggttaga-----gatagtgattctatttaaagagtcacct |
17590437 |
T |
|
| Q |
114 |
ttaattattttaaacgcttagatgagtt-ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttaca |
200 |
Q |
| |
|
|| |||||||||| |||| ||||| || |||||||||||||||| |||||||| |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
17590438 |
ttgtttattttaaatgcttggatgaattattttaagccttggaggataagacttatttgcttta-attgggtttaaatattagttaca |
17590524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 346 - 769
Target Start/End: Original strand, 28474144 - 28474572
Alignment:
| Q |
346 |
ttttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagccttacataaaatctctttattttatt |
444 |
Q |
| |
|
|||| ||||||||| ||| |||||||| | ||| ||||||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
28474144 |
ttttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaatctctt-attttatt |
28474242 |
T |
|
| Q |
445 |
atagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaat-----tcagtgtgataatggtcatatcgtttgctctacctgctgtcctaa |
539 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
28474243 |
ctaacaaatggttcaaagtataatttgatgattttcttttatgttgcaatacctttcagtgtgataatggtcatattgtttgctctacctgctgtactaa |
28474342 |
T |
|
| Q |
540 |
acttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaat |
639 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |||| |
|
|
| T |
28474343 |
acttaggaacaagtgtcatgagtgctcgttgcgcattagctcaaaacgttgtaaagccattgagaatatattgttatctattgaaatgccatgtccgaat |
28474442 |
T |
|
| Q |
640 |
gcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtg |
739 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| || ||||| ||||||| |
|
|
| T |
28474443 |
gcaaaccatggttgcaaggagaaaataagttacactggaaataggaagcatgaagacgaatgcatctactttccatgttactgccctctttctggttgtg |
28474542 |
T |
|
| Q |
740 |
actttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
|||||| ||| || ||||||||| |||||| |
|
|
| T |
28474543 |
actttgctgcatcatcagaagtgttgtcca |
28474572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 435 - 762
Target Start/End: Complemental strand, 32652533 - 32652206
Alignment:
| Q |
435 |
ttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgt |
534 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
32652533 |
ttattttattttagtaaatggttcaaagtctaacttgatgattttcttttatgttgcaattcagtgtgataatggtcatattgtttgctctacctgcagt |
32652434 |
T |
|
| Q |
535 |
cctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtc |
634 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
32652433 |
actaaacttagaaacaagtgtcacaattgctcgttgcccattagctcaaaacattgtaaagccgctgagaatctattgctatctattgaaatgtcatgtc |
32652334 |
T |
|
| Q |
635 |
tgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcagg |
734 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||| ||||||||||| ||| ||||||||||| || || || | |
|
|
| T |
32652333 |
cgaatgcaaaacatggttgcaatgagaaaataagttacattggaaagaggaggcatgaaaaagaatgcatccatgcgccatgttactgccctgttccaag |
32652234 |
T |
|
| Q |
735 |
ttgtgactttgttgcgtcgtcagaagtg |
762 |
Q |
| |
|
|||| |||||||||| || ||||||||| |
|
|
| T |
32652233 |
ttgtcactttgttgcatcatcagaagtg |
32652206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 434 - 767
Target Start/End: Complemental strand, 32662676 - 32662343
Alignment:
| Q |
434 |
tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctg |
533 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||||||| |||||||||| ||||||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32662676 |
tttattttattctagcaaatggttcttagtctaatttgattattttcttttatgttgcactacagtgtgataatggtcatattttttgctctacctgcta |
32662577 |
T |
|
| Q |
534 |
tcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgt |
633 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32662576 |
tcctaaacttgggaacaagcgtcacaagtgctcgttgcgtattagctcaaaacgttgtaaagccattgagaatctattgctatctattgaaatgtcatgt |
32662477 |
T |
|
| Q |
634 |
ctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcag |
733 |
Q |
| |
|
| ||||| ||| ||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||| |||| ||||||| ||| || ||||| |
|
|
| T |
32662476 |
ccgaatgtaaatcatggttgcaatgagaaaataagttgcattggaaagaggaagcatgaagaagaatgcatccatgtgccatgttgctgccctgtttcaa |
32662377 |
T |
|
| Q |
734 |
gttgtgactttgttgcgtcgtcagaagtgatgtc |
767 |
Q |
| |
|
| |||||||||||||| || ||||||||| |||| |
|
|
| T |
32662376 |
gctgtgactttgttgcatcatcagaagtgttgtc |
32662343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 434 - 749
Target Start/End: Original strand, 32857635 - 32857953
Alignment:
| Q |
434 |
tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctg |
533 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||||||||| ||||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
32857635 |
tttattatattctagcaaatggttcaacgtctaatttgctgattc-cttttttgttgcatttcagtctaataatggtcatattgtttgctctacctgctg |
32857733 |
T |
|
| Q |
534 |
tcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgt |
633 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
32857734 |
tcctaaacttaggaacaagtgttacaagtgctccttgcccattagcgcaaaatgttgtaaagccattgagaatttattgctatctatcgaaatgtcatgt |
32857833 |
T |
|
| Q |
634 |
ctg-aatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcat---ctatgtaccatgttactgtcccctt |
729 |
Q |
| |
|
| | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
32857834 |
ccgaaatgcaaagcatggttgcaaggagaaaataagttacactggaaagagtaagcatgaagaagaatgcttctactatgagccatgttactgccccctt |
32857933 |
T |
|
| Q |
730 |
tcaggttgtgactttgttgc |
749 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32857934 |
tcaggttgtgactttgttgc |
32857953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 291 - 769
Target Start/End: Original strand, 32762222 - 32762712
Alignment:
| Q |
291 |
ctataccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagctt-atgttggttat |
389 |
Q |
| |
|
|||| |||||||||| |||||| || | |||||||||| |||||||||| ||||| |||| |||| ||| | |||||| ||||| ||| | ||||| |
|
|
| T |
32762222 |
ctatgccgctatagcgttttggaggctatttgcaatccgtcattgagtacataaattttgagaataatatattgaaaatgattagctttatggttgttat |
32762321 |
T |
|
| Q |
390 |
acttttgattgcatgatct-gctaacaagccttacataaa-atctctt----tattttattatagaaaatggttcaaagtctaatttgatgattttcttt |
483 |
Q |
| |
|
|||||||||| ||| | || ||| ||| ||||||| | | ||||||| ||||||||| || |||||||||||| |||||||||||||||| |||| |
|
|
| T |
32762322 |
acttttgatttcataaacttgctttcaatccttacaaagacatctcttattttattttattctaacaaatggttcaaactctaatttgatgatttgcttt |
32762421 |
T |
|
| Q |
484 |
tttgttgcaat-----tcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattag |
578 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| ||| | ||||| |
|
|
| T |
32762422 |
tatgttgcaatacctttcagtgcgataatggtcatattatttgctctacctgctgtcctaaactcaggaacaagtgtttcatgtgctctttgaatattag |
32762521 |
T |
|
| Q |
579 |
ctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacactgga |
678 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| || | |
|
|
| T |
32762522 |
ctcaaaacgttgtaaatacattgagaacgtattgcaatctattgaaatgtcatgtccgaatgcaaaatatggttgcagggagaaaataagttacattgaa |
32762621 |
T |
|
| Q |
679 |
aataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
||||||||||||||||| ||||||||||| | || ||||||||| |||||||||||||||||||||| ||| || ||||||||| |||||| |
|
|
| T |
32762622 |
aataggaagcatgaagaggaatgcatctacgaactatgttactgccccctttcaggttgtgactttgctgcatcatcagaagtgttgtcca |
32762712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 333 - 767
Target Start/End: Complemental strand, 32656902 - 32656456
Alignment:
| Q |
333 |
ttgagtacattgattttaagaagaataaattaagaatgatcagct-tatgttggttatacttttgattgcatgatctgctaacaagcctt-acata-aaa |
429 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||| | || |||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |
|
|
| T |
32656902 |
ttgagttcattgattttgagaagaataaattgagaatgattaactatatgttggttatacttttaattgcatggcttgctaacaagcctttacatagaaa |
32656803 |
T |
|
| Q |
430 |
tctc---------tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgttt |
520 |
Q |
| |
|
| || ||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
32656802 |
tgtcctattttattttattttattctagcaaatggttcattgtataatttgattgttttcttttttgttgcaatgcagtgtgacaatggtcatattgttt |
32656703 |
T |
|
| Q |
521 |
gctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctat |
620 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||||| |||| || |||||| |||| ||||||||||||||||||||||||| |||| | |
|
|
| T |
32656702 |
gctctacctgctgtcctaaacttggaaacaagtgttacaagtgctcattgcccactagctccaaacattgtaaagccattgagaatctattggtatctct |
32656603 |
T |
|
| Q |
621 |
cgaaatgtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttac |
720 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||| ||||||| |||| ||||| |||||| ||||||||||| |||| || |||||| |
|
|
| T |
32656602 |
tgaaatgtcatgtccgaatgcaaaatatggttgcaacaagaaaattagttacatcagaaagaggaatcatgaaaaagaatgcatccatgtgccctgttac |
32656503 |
T |
|
| Q |
721 |
tgtcccctttcaggttgtgactttgttgcgtcgtcagaagtgatgtc |
767 |
Q |
| |
|
||||| ||||| |||||| ||||||||| || || |||||| |||| |
|
|
| T |
32656502 |
tgtcctatttcaagttgtggctttgttgcatcatccgaagtgttgtc |
32656456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 347 - 769
Target Start/End: Complemental strand, 32558682 - 32558254
Alignment:
| Q |
347 |
tttaagaagaataaattaagaatgatcagctta-tgttggttatacttttgattgcatgatctgctaacaagccttacata-aaatct----ctttattt |
440 |
Q |
| |
|
||||||||||| || || |||||||| || || ||||||||||||||||||||||| || |||||||||||||| || | |||||| |||||||| |
|
|
| T |
32558682 |
tttaagaagaaaaatttgagaatgattagttttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttactttattt |
32558583 |
T |
|
| Q |
441 |
tattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaa |
540 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| ||||||||||| |||| |||| || |
|
|
| T |
32558582 |
tattctacctaatggttcaaagtctaatttgatgactatcttttatgttgcaattcagtgcgataatgatcatattgtttgctctacttgctttcctcaa |
32558483 |
T |
|
| Q |
541 |
cttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatg |
640 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||| ||||| |||| | ||| |
|
|
| T |
32558482 |
cttatgaacaactgtcacaagtgctcaatgcccattagctcaaaatgttgcaaagtcattgagaatatatcgcaatctatccaaatgccatgcccgaaca |
32558383 |
T |
|
| Q |
641 |
caaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtga |
740 |
Q |
| |
|
|||| |||| |||| ||||| ||||||| | | |||||| ||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
32558382 |
aaaaatatggctgcagggagacaataagtcaaagtggaaagaggaaacatgaagaagaatgcatctatgtgccatgttactgtcccgttaaaggttgtga |
32558283 |
T |
|
| Q |
741 |
ctttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
|||||||| || | ||||||| |||||| |
|
|
| T |
32558282 |
ttttgttgcctcattagaagtgttgtcca |
32558254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 333 - 767
Target Start/End: Original strand, 32739361 - 32739800
Alignment:
| Q |
333 |
ttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcatgatctgctaacaagccttacataaaa--- |
429 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || ||||| ||||| ||||||||||||||||||| | || | ||||||||||||||| | | || |
|
|
| T |
32739361 |
ttgagtacatagattttaagaagaataaacttagtatgattagctt-tgttggttatacttttgatcgtataacttgctaacaagccttataaagaaatg |
32739459 |
T |
|
| Q |
430 |
tct--ctttattttattatagaaaatggttcaaagtctaatttgatgattttctttttt-gttgcaattcagtgtgataatggtcatatcgtttgctcta |
526 |
Q |
| |
|
||| |||||||||||||||| || |||||||||||| ||||||||| |||| |||||| | |||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
32739460 |
tcttactttattttattatagcaattggttcaaagtcgaatttgatggttttgtttttttgctgcaatacagtgtgataatggtcatattgtctgctcta |
32739559 |
T |
|
| Q |
527 |
cctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaat |
626 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||| ||| ||| ||||| ||||| ||| ||||||||||||||||||||| |||||| ||| | |
|
|
| T |
32739560 |
cttgctgtcctaaacttcggaacaagtgtcacaagtgctcattgtccatcagctctaaacgctgtgaagccattgagaatctattgcgatctattgaagt |
32739659 |
T |
|
| Q |
627 |
gtcatgtctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtccc |
726 |
Q |
| |
|
| |||||| |||||||||| ||||||||| || || || || |||| | | | ||| | |||||| | ||||||||| || ||||||||||||||| |
|
|
| T |
32739660 |
gccatgtccgaatgcaaaatatggttgcagggtgacaaataggtacattaggcagagggatcatgaaaacgaatgcatccataagccatgttactgtccc |
32739759 |
T |
|
| Q |
727 |
ctttcaggttgtgactttgttgcgtcgtcagaagtgatgtc |
767 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||| |||| |
|
|
| T |
32739760 |
ttttcaggatgtgactttgttgaatcatcagaagtgttgtc |
32739800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 456 - 769
Target Start/End: Original strand, 25468977 - 25469287
Alignment:
| Q |
456 |
ttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgt |
555 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
25468977 |
ttcaaagtctaatttgatggtttatttttttgttgcaattcagtgtgataatggccatattgtttgctctacctgctgtgataaacttgagaagaagtgt |
25469076 |
T |
|
| Q |
556 |
cacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaa---atgtcatgtctgaatgcaaaacatggtt |
652 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||| || ||||||| ||||| ||||||||||| |
|
|
| T |
25469077 |
ccgaagtgct------acattagctcgaaacgttgtaaagccattgagaatatattgcaatctatggaagaaatatcatgtccgaatgaaaaacatggtt |
25469170 |
T |
|
| Q |
653 |
gcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgcgtc |
752 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||| ||| |||||||||||||||| ||||| || |
|
|
| T |
25469171 |
gcagggagacaataagttactgcagaaataggaagcatgaaaaagaatgtatctatgagccatgttactgccccttttcaggttgtgacttcgttgcatc |
25469270 |
T |
|
| Q |
753 |
gtcagaagtgatgtcca |
769 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
25469271 |
atcagaagtgctgtcca |
25469287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 441 - 769
Target Start/End: Original strand, 32767287 - 32767612
Alignment:
| Q |
441 |
tattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaa |
540 |
Q |
| |
|
|||||||| || || | ||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
32767287 |
tattatagcaactgttccaaagtctaatttaatgaatttcatttttgtttcaattcagtgtgataatggtcatattgtttgctctacctgctctcctaaa |
32767386 |
T |
|
| Q |
541 |
cttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatg |
640 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| ||| |||||| ||||| ||||||| ||||| |
|
|
| T |
32767387 |
cttaggaacaagtgttg---gtgctcattgcccattagctcaaaacattgtaaagccattgagaatctaatgctatctattgaaatatcatgtccgaatg |
32767483 |
T |
|
| Q |
641 |
caaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtga |
740 |
Q |
| |
|
| |||||||||| | | ||||||||||||| |||||| ||||||||||||| |||||||| || |||| ||||||||| ||| ||| |||||||| |
|
|
| T |
32767484 |
ccgaacatggttgtagagtaaaaataagttacatcggaaatcggaagcatgaagacgaatgcatatacgtactatgttactgccccattttaggttgtgg |
32767583 |
T |
|
| Q |
741 |
ctttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
||||| ||| | ||||||||| |||||| |
|
|
| T |
32767584 |
ctttgctgcaacatcagaagtgttgtcca |
32767612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 437 - 769
Target Start/End: Original strand, 32709570 - 32709901
Alignment:
| Q |
437 |
attttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcc |
536 |
Q |
| |
|
|||||||| ||||||||| || ||| ||||||||||||||| || | ||||||||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
32709570 |
attttattctagaaaatgattaaaaagctaatttgatgattt-ctcatatgttgcaattcagtgtgttaatggtcatattgtttgctcaacctgctgtga |
32709668 |
T |
|
| Q |
537 |
taaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctg |
636 |
Q |
| |
|
||||| | |||||||||||| ||| ||||| | ||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | | |
|
|
| T |
32709669 |
taaacatcggaacaagtgtcccaaatgctcaaaacgtattcgcttaaaacgttgtaaagccattgagaatcttttgcaatctttcgaaatgtcatgcccg |
32709768 |
T |
|
| Q |
637 |
aatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggtt |
736 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| | |||| || || | |||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
32709769 |
aatgaaaaacatggctgcaaggagacaatgggctacaatgagaagaagaagcatgaagaagaatgtatgtatgtgccatgttactgtcccctttcaggtt |
32709868 |
T |
|
| Q |
737 |
gtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
||||||||||||| || ||||||||| |||||| |
|
|
| T |
32709869 |
gtgactttgttgcctcatcagaagtgttgtcca |
32709901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 382 - 654
Target Start/End: Original strand, 25477214 - 25477491
Alignment:
| Q |
382 |
ttggttatacttttgattgcatgatctgctaacaagccttacata-aaatctctttattttattatagaaaatggttcaaagtctaatttgatga-tttt |
479 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| | |||| | ||| || | || ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
25477214 |
ttggttatacttttgat-gcagaacttgctaacaagccttacaaagaaatatgttttttct-ttctagaaaatgcttcaaagtctaatttgatgggtttt |
25477311 |
T |
|
| Q |
480 |
cttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagc |
579 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
25477312 |
tttttttgttgcaatttagtgtgataatgggcatattgtttgctctacctgctgtgataaacttgggaacaagtgtcagaagtgctcattgcacattagc |
25477411 |
T |
|
| Q |
580 |
tc-aaaacgttgtaaagccattgaga----atctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatggttgc |
654 |
Q |
| |
|
|| |||| |||||||||||||||||| || ||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
25477412 |
tcaaaaatgttgtaaagccattgagaatatatatattgcaatatatggaaatgtcatgtccgaatgaaaaacatggttgc |
25477491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 436 - 506
Target Start/End: Complemental strand, 32660899 - 32660829
Alignment:
| Q |
436 |
tattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataa |
506 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32660899 |
tattttattctagcaaatggttcaacgtctaatttgatgagtttcttttttgttgcaattcagtgtgataa |
32660829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 296 - 403
Target Start/End: Original strand, 32857482 - 32857590
Alignment:
| Q |
296 |
ccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagc-ttatgttggttatacttt |
394 |
Q |
| |
|
|||||| ||| ||||| | || ||| ||||||| | |||||||||| |||||| ||||||||||||| ||||| || ||| |||||||||||||||||| |
|
|
| T |
32857482 |
ccgctagagcgttttgagggccagccgcaatccatcgttgagtacatagattttgagaagaataaattgagaataattagctttatgttggttatacttt |
32857581 |
T |
|
| Q |
395 |
tgattgcat |
403 |
Q |
| |
|
|| |||||| |
|
|
| T |
32857582 |
tgcttgcat |
32857590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 32661215 - 32661124
Alignment:
| Q |
105 |
gaatcacttttaattattttaaacgcttagatgagtt-ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattag |
195 |
Q |
| |
|
||||||||||| || || |||| | ||||||||||| ||||||| |||||| | | |||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
32661215 |
gaatcacttttgtttgttataaatgattagatgagttcttttaagtcttggaagttcagacttatttgctttacattgggtttggatattag |
32661124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 32761912 - 32761949
Alignment:
| Q |
14 |
agatagatgcataacaaatgaggtctagtagtgaagag |
51 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32761912 |
agatagatgctttacaaatgaggtctagtagtgaagag |
32761949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 450 - 768
Target Start/End: Original strand, 16756349 - 16756667
Alignment:
| Q |
450 |
aaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaac |
549 |
Q |
| |
|
|||||||| |||||||||||| ||||| | | || ||||| |||||||||||||||||||||||| ||||||||||||||||| |||| || ||||| |
|
|
| T |
16756349 |
aaatggttgaaagtctaatttaatgatatacaattatgttgaaattcagtgtgataatggtcatattgtttgctctacctgctgctctaagtttgggaac |
16756448 |
T |
|
| Q |
550 |
aagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaacatg |
649 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||| |||| ||| |
|
|
| T |
16756449 |
aagtgtgacaagtgctcaaaatgcattagcttaaaacgttgtagagcctttgagaatctattgcaatatatcaaaatgccatgtctgaatgaaaaatatg |
16756548 |
T |
|
| Q |
650 |
gttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttcaggttgtgactttgttgc |
749 |
Q |
| |
|
|||||||||||| ||| ||||| | || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
16756549 |
gttgcaaggagacaatcgattacattcagaagaggaagcatgaagaagaatgcatctatgtgccatgttattgccccctttcaggttgtgactttgttgc |
16756648 |
T |
|
| Q |
750 |
gtcgtcagaagtgatgtcc |
768 |
Q |
| |
|
|| ||||| ||| ||||| |
|
|
| T |
16756649 |
ttcatcagaggtgttgtcc |
16756667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 433 - 769
Target Start/End: Original strand, 16751851 - 16752187
Alignment:
| Q |
433 |
ctttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgct |
532 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||| |||||| | ||| ||||| |||||||||| | | ||||||||| ||||||| |||||||| |
|
|
| T |
16751851 |
ctttattttactctatcaaatggttcaaagtctaatttggtgatttacatttatgttgaaattcagtgtaaaactggtcatattgtttgctttacctgct |
16751950 |
T |
|
| Q |
533 |
gtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatg |
632 |
Q |
| |
|
|| |||| ||| |||||||||| |||||||||| |||||||| ||||||||| | |||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
16751951 |
gttctaagcttgggaacaagtgcgacaagtgctcaaaatgcattagcttaaaacgttgcagagcctttgagaatctattgcaatatatcaaaatgtcatg |
16752050 |
T |
|
| Q |
633 |
tctgaatgcaaaacatggttgcaaggagaaaataagttacactggaaataggaagcatgaagaagaatgcatctatgtaccatgttactgtcccctttca |
732 |
Q |
| |
|
| ||||| |||| ||||||||| |||| |||| ||||| | || | ||||||||||||| ||||||||||||| |||||||| || ||| ||||| |
|
|
| T |
16752051 |
cccgaatgaaaaatatggttgcagagagacaatagattacagtcagaagacgaagcatgaagaaaaatgcatctatgtcccatgttattgccccatttca |
16752150 |
T |
|
| Q |
733 |
ggttgtgactttgttgcgtcgtcagaagtgatgtcca |
769 |
Q |
| |
|
|||||||| |||||||| || ||||| ||| |||||| |
|
|
| T |
16752151 |
ggttgtgattttgttgcctcatcagaggtgttgtcca |
16752187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 657 - 767
Target Start/End: Original strand, 21524147 - 21524260
Alignment:
| Q |
657 |
ggagaaaataagttacactggaaataggaagcatgaagaagaatgcatcta---tgtaccatgttactgtcccctttcaggttgtgactttgttgcgtcg |
753 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
21524147 |
ggagaaaataagttacaccggaaagagtaagcatgaagaagaatgcttctactatgagccatgttactgccccctttcaggttgtgactttgttgcatca |
21524246 |
T |
|
| Q |
754 |
tcagaagtgatgtc |
767 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
21524247 |
tcagaagtgttgtc |
21524260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 25398468 - 25398390
Alignment:
| Q |
118 |
ttattttaaacgcttagatgagtt-ttttaagccttggaggct--aagacttgtttgatttacattgggtttgaatatt |
193 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||| ||||| || |||| ||||||||| |||||||||||||||| |
|
|
| T |
25398468 |
ttattttaaatgcttagatgagttgttttaaatcttgaaggctctaaaacttatttgatttatattgggtttgaatatt |
25398390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 29506676 - 29506614
Alignment:
| Q |
142 |
ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttacaatga |
204 |
Q |
| |
|
|||||||||| ||| ||||| |||| |||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
29506676 |
ttttaagcctgggaagctaaaacttatttgctttatgttgggtttgaatattagtaacaatga |
29506614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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