View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_high_6 (Length: 549)
Name: NF11961_high_6
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13630913 - 13630646
Alignment:
| Q |
1 |
ctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgctgaagcaatgtgtctcttcttcttcttcacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13630913 |
ctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttcttcttcttcacaac |
13630814 |
T |
|
| Q |
101 |
tatctccttaatcttactgctcctagaatctgaggatagtaaatggggttcttgttcattattcatcactgctagaataatagttaaataatcaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13630813 |
tatctccttaatcttactgctcctagaatctgaggatagtaaatggggttcttgttcattattcatcactgctagaataatagtaaaataatcaacaaaa |
13630714 |
T |
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| Q |
201 |
actagtgac-nnnnnnnnnttaaaattttgcaaaggagaattctaagacgtactaaacatgattgcgg |
267 |
Q |
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| T |
13630713 |
actagtgacaaaaacaaaattaaaattttgcaaaggagaattttaagatgtactaaacatgattgcgg |
13630646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13731325 - 13731058
Alignment:
| Q |
1 |
ctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgctgaagcaatgtgtctcttcttcttcttcacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13731325 |
ctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttcttcttcttcacaac |
13731226 |
T |
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| Q |
101 |
tatctccttaatcttactgctcctagaatctgaggatagtaaatggggttcttgttcattattcatcactgctagaataatagttaaataatcaacaaaa |
200 |
Q |
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| T |
13731225 |
tatctccttaatcttactgctcctagaatctgaggatagtaaatggggttcttgttcattattcatcactgctagaataatagtaaaataatcaacaaaa |
13731126 |
T |
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| Q |
201 |
actagtgac-nnnnnnnnnttaaaattttgcaaaggagaattctaagacgtactaaacatgattgcgg |
267 |
Q |
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| T |
13731125 |
actagtgacaaaaacaaaattaaaattttgcaaaggagaattttaagatgtactaaacatgattgcgg |
13731058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 365 - 531
Target Start/End: Complemental strand, 13630548 - 13630382
Alignment:
| Q |
365 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
464 |
Q |
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| T |
13630548 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13630449 |
T |
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| Q |
465 |
accacagattctttttgagtcttaatactctctttgggtgtccctttctctatgtcttgaaccacat |
531 |
Q |
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| T |
13630448 |
accacagattctttttgagccttattactctctttgggtgtccctttctctatgtcttgaaccacat |
13630382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 365 - 531
Target Start/End: Complemental strand, 13730960 - 13730794
Alignment:
| Q |
365 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
464 |
Q |
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| T |
13730960 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13730861 |
T |
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| Q |
465 |
accacagattctttttgagtcttaatactctctttgggtgtccctttctctatgtcttgaaccacat |
531 |
Q |
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| T |
13730860 |
accacagattctttttgagccttattactctctttgggtgtccctttctctatgtcttgaaccacat |
13730794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 13749625 - 13749570
Alignment:
| Q |
33 |
ccaagaattgagccaaagagtagtgctgttgatgctgaagcaatgtgtctcttctt |
88 |
Q |
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||||| |||| ||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
13749625 |
ccaagcattgtgccgaaaaggagtgctgttgatgctgaagcaatgtgtctcttctt |
13749570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 9277210 - 9277125
Alignment:
| Q |
4 |
caaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgctgaagcaatgtgtctcttcttc |
89 |
Q |
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| T |
9277210 |
caaatataagggttgcagcttgaataaggccaagaactgtgccaaaaagtaatgctgttgatgctgaagcaatgtgcctcttcttc |
9277125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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