View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11961_high_7 (Length: 527)
Name: NF11961_high_7
Description: NF11961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11961_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Complemental strand, 2949776 - 2949273
Alignment:
| Q |
17 |
agtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcctattttggtcagacaaatacataactcactcatcaaatctaggaa |
116 |
Q |
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| T |
2949776 |
agtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcctattttggtcagacaaatacataactcactcatcaaatctaggaa |
2949677 |
T |
|
| Q |
117 |
aaatctcctaaaaaactggcatatacacctgcttacttttgtattatagggactctttaccataataaggataatgaaaaaa-taataatgtctccttga |
215 |
Q |
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| T |
2949676 |
aaatctccttaaaaactggcatatacacctgcttacttttgtattatagggactctttaccataataaggataatgaaaaaaataataatgtctccttga |
2949577 |
T |
|
| Q |
216 |
agaaagaagacgtgcagaagaggaagcatcccaagtaattaagagacatatcatgcaaggctagcaattgaacacatcatgtcatatgatatatgtatgc |
315 |
Q |
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| T |
2949576 |
agaaagaagacgtgcagaagaggaagcatcccaagtaattaagagacatatcatgcaaggctagcaattgaacacatcatgtcatatgatatatgtatgc |
2949477 |
T |
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| Q |
316 |
agttaacaaaacatattgagtgttttattatagacagatatataatttcaattattctattctatctccaactactagtacagctcttttaacaaccaac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949476 |
agttaacaaaacatattgagtgttttattatagacagatatataatttcaattattctattctatctccaactactagtacagctcttttaacaaccaac |
2949377 |
T |
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| Q |
416 |
ctcacgaaatactatttgaaatcacaaatttatattattttcttcaagtggttctagaatttccctgcctatttaactacattttctgatacttctttct |
515 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949376 |
ttcacgaaaaactatttgaaatcacaaatttatattattttcttcaagtggttctagaatttccctgcctatttaactacattttctgatacttctttct |
2949277 |
T |
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| Q |
516 |
tctc |
519 |
Q |
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|||| |
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| T |
2949276 |
tctc |
2949273 |
T |
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